Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00864 ATGACAGGGAAGAGAAACCAAACCAGTCCTGTTGGGAGTCCAACATCTGGGAACATCTCAGACTCTTCAAAAGAACAAGACAGGTTCCTCCCTATAGCCAACGTGAGCCGTATCATGAAAAGGGCACTCCCAGCTAATGCTAAAATCTCAAAGGAAGCAAAGGAAACAGTCCAAGAATGTGTCTCTGAATTCATAAGCTTCATCACTGGTGAAGCCTCTGACAAGTGCCAAAGAGAAAAGAGGAAGACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGGTTTGAGAACTATGTTGGACCCTTGAAGGTCTATCTTAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCCATGGCTAAACAAGAAGATCATTCTCCAACTGAAGCCAATGATGGGGTAGCTGAAACCAACAAATTGGCTCATTCTATGTCAAACAAAGCAGATTTTCCAAGTTTCAATGGTGGGTTCTATTCTTTTGGGTCTGAAGTAACTCCAAAGAGCTTCCAAGAGATTGGAGGGATCAATGGTTATAGAGAAAGTTCCATGAATAGGTCCATTACTCAAAGTGCGGTCAATGGTGATCCAGATGTAAATGGTGATAGAATGATGCCAGCCAACCTACGTTATAGGGTTGAATGGTAG 654 0.4251 MTGKRNQTSPVGSPTSGNISDSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSSMAKQEDHSPTEANDGVAETNKLAHSMSNKADFPSFNGGFYSFGSEVTPKSFQEIGGINGYRESSMNRSITQSAVNGDPDVNGDRMMPANLRYRVEW* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00864 217 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Rops2g00864 217 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Rops2g00864 217 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Rops2g00864 217 FunFam Nuclear transcription factor Y subunit B-3 18 142 - -
Rops2g00864 217 MobiDBLite consensus disorder prediction 1 27 - -
Rops2g00864 217 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops2g00864 217 Gene3D Histone, subunit A 18 153 IPR009072 GO:0046982
Rops2g00864 217 SUPERFAMILY Histone-fold 26 149 IPR009072 GO:0046982
Rops2g00864 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops2g00864 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00864 Rops-Chr2 12309718 12310599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00864 22 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.714 5.04e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops2g00864 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00864 K08065 - gmx:100810059 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00864 2 12309718 12310599 Rops2g00864 2 12309718 12310599 ECH