Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00858 ATGGCGCCGAAGCAGAGAACAAGGAGTGTTAGCAGAAACCCAGAATTGATAAGGGGAATCAGAAAGTACTCGAGGTCTCAGATGTACCACAAGAGGGGTATCTGGGCTATTAAGGCTAAAAACGGTGGCGTTTTCCCTCGCCATGATCCTAAACCTAAACCTGAAGCTCCTGCTGAGAAACCCCCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTTGTCAACAAACACAAACCTAAACCCACTAAGCTCAGGGCTAGCATTAGTCCTGGGACAGTGTTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGAGTGGTGTTTCTGAAGCAGCTCCCTTCTGGATTGCTTCTTGTAACTGGTCCTTTCAAGATTAACGGGGTTCCTTTGAGACGTGTGAATCAGTCCTATGTGATTGGCACATCAACCAAAGTAGATGTCTCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTTGCAAAGGAAGCCCAGAAAAAGAAGAAGAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAGTGCTTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCCGCATTGTTAAAAGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATTTGGGTGCCAGGTTTTCCCTTAAGGCAGGCGTGAAGCCCCATGAGCTAGTCTTCTAA 702 0.4601 MAPKQRTRSVSRNPELIRGIRKYSRSQMYHKRGIWAIKAKNGGVFPRHDPKPKPEAPAEKPPKFYPADDVKKPLVNKHKPKPTKLRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFAKEAQKKKKKGEGEFFEAEKEEKSALPQQKKDDQKTVDSALLKAIESVPDLKAYLGARFSLKAGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00858 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Rops2g00858 233 CDD KOW_RPL6 81 233 IPR041997 -
Rops2g00858 233 Gene3D - 87 171 IPR014722 -
Rops2g00858 233 FunFam 60S ribosomal protein L6 87 171 - -
Rops2g00858 233 Coils Coil 162 182 - -
Rops2g00858 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Rops2g00858 233 MobiDBLite consensus disorder prediction 44 70 - -
Rops2g00858 233 MobiDBLite consensus disorder prediction 172 194 - -
Rops2g00858 233 MobiDBLite consensus disorder prediction 40 70 - -
Rops2g00858 233 PANTHER 60S RIBOSOMAL PROTEIN L6 7 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Rops2g00858 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00858 Rops-Chr2 12217989 12219708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00858 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 81.116 5.93e-123 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00858 K02934 - gmx:100499766 390.578