LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00834	ATGCCAAGATATTTGCAGCTTACAGTTGCCATGGGATGTGTTAACAGCAAGTATACTCCCCCTCGAAACCAAAACAGAAAAAGAAACGACAATGTTGAGAAGTTGAAACGGGACAATGAGTATGTGAACAGTGTTTCTGGACTCAAACCAATCAACCAGAAGAACTATTCAATGACACATTCATCAAAGCACGTTGGAGTGGAGCCTAAGAAGAAAGTGGTGAGTGATCATAAGATTACTACGGGTGGTGGTGTTGAAGGACGAGAAGAAGGAGATGGGGATGATAGGGTAAAGGGTGTTGCTAGAAATGATGACAAGAGTGAGGTTGGGAATGTTTCCAGTAGGTCTGACGAGAAGAAGAAGATTGCAAGCTATGAATTTGTGGACGGGTGGCCAAAATGGCTGGTTGAAAATATTCCCAAAAACGTTTTGGCTACTTTGGTTCCCAAGAGTGCTGATTCCTATGAAAAACTCGGAAAGGTAGGACGAGGAACATATAGCAATGTATACAAAGCCCGAGATAAGGACACCAAAAAGATTGTTGCTTTAAAGAAGGTACGATTTGACACATCGGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATGCTGCAAACACTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATCTAGTTTTTGATTACATGCAGTCTGACCTTACTAGAATTATCTCCCGCCCTGGGGAGAGACTCACTGAACCACAGATCAAGTGTTACATGAGGCAGCTGCTTTTGGGGCTCCAGCATTGTCATGAGAGGGGAGTTATGCACCGAGATATTAAAGCTTCTAACTTGTTAATAGATAAAAGTGGGGTGCTAAAAATTGCAGATTTTGGGCTTGCAAATTCTTTTGCTATTAAACCTGAAGGGCCTCTTACAAATAGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACCGATTATGATTATAGCATTGATCTCTGGAGTGCAGGATGCTTGTTGGCTGAGATGTTTATTGGAAGACCAATTATGCCTGGAAGGACAGAGATTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGAGGATTACTTTAAAAAAATGAAGCTAATGACAAGCTACCGTCCACCACAACATTATAAAGCTAGGTATGAAGAAAACTTCAGCGATTCTCCTTCCTCTGCCCGTGGTCTTTTGACTACACTTCTTGATCTATACTCTGACCGTCGTGGCAGTGCTGCCTCTGCTCTTGAAAGTGAATTCTTCAAATCTAGTCCACTAGCATGTGACCCTTCAGCGTTACCAGTGATCTACAAAGATGAGGATGAACTCTCACAAACTAAGAGACGCAAAAGGCGCAAGGGATTGAAAAAAGGGCTGGCATCTAAAACAAGTACAAGCAATGTAAGCCTGTCTGGAAAGAACCATACTGCTAGCAGAGATTCAAAACCATCCAAGGAGAAGAGTATGGAACAAAACATGCAAGGTCGAGAAACGGGGCATAGTGGAAGCAGCAAATCATCACTATTTATGAACGAAAGGAGCATGAATACATCTATATCCCCGGTTTTTCTCTCTAGTGGGAGACATTCCCCCAAAACTGAGGGTCATCCTAATGCTCTCAAGAACATAAAGAACTACACCCTCTTACAGGCCTCTATTATTGATATGATCAATCACAACGAAGGCAATGAATTGGGCCTTCTTCGTAAGTCCTTTTCTATGTTGGATTTTCGGCTTGATCCTGACAAGCTATCAAGTCTATATGGACCAAATAACAAGCTGGACCATGAAATTTGA	1845	0.4184	MPRYLQLTVAMGCVNSKYTPPRNQNRKRNDNVEKLKRDNEYVNSVSGLKPINQKNYSMTHSSKHVGVEPKKKVVSDHKITTGGGVEGREEGDGDDRVKGVARNDDKSEVGNVSSRSDEKKKIASYEFVDGWPKWLVENIPKNVLATLVPKSADSYEKLGKVGRGTYSNVYKARDKDTKKIVALKKVRFDTSDSESIKFMAREIMMLQTLDHPNVIKLEGLATSRMQYSLYLVFDYMQSDLTRIISRPGERLTEPQIKCYMRQLLLGLQHCHERGVMHRDIKASNLLIDKSGVLKIADFGLANSFAIKPEGPLTNRVVTLWYRAPELLLGSTDYDYSIDLWSAGCLLAEMFIGRPIMPGRTEIEQLHMIFKLCGSPSEDYFKKMKLMTSYRPPQHYKARYEENFSDSPSSARGLLTTLLDLYSDRRGSAASALESEFFKSSPLACDPSALPVIYKDEDELSQTKRRKRRKGLKKGLASKTSTSNVSLSGKNHTASRDSKPSKEKSMEQNMQGRETGHSGSSKSSLFMNERSMNTSISPVFLSSGRHSPKTEGHPNALKNIKNYTLLQASIIDMINHNEGNELGLLRKSFSMLDFRLDPDKLSSLYGPNNKLDHEI*	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00834	614	FunFam	probable serine/threonine-protein kinase At1g54610	142	237	-	-
	Rops2g00834	614	SUPERFAMILY	Protein kinase-like (PK-like)	149	443	IPR011009	-
	Rops2g00834	614	MobiDBLite	consensus disorder prediction	510	524	-	-
	Rops2g00834	614	MobiDBLite	consensus disorder prediction	494	509	-	-
	Rops2g00834	614	PANTHER	CELL DIVISION PROTEIN KINASE	153	442	-	-
	Rops2g00834	614	MobiDBLite	consensus disorder prediction	460	524	-	-
	Rops2g00834	614	MobiDBLite	consensus disorder prediction	64	115	-	-
	Rops2g00834	614	Gene3D	Phosphorylase Kinase; domain 1	144	237	-	-
	Rops2g00834	614	MobiDBLite	consensus disorder prediction	475	493	-	-
	Rops2g00834	614	SMART	serkin_6	155	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g00834	614	ProSiteProfiles	Protein kinase domain profile.	155	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g00834	614	MobiDBLite	consensus disorder prediction	61	115	-	-
	Rops2g00834	614	FunFam	Putative serine/threonine-protein kinase	238	474	-	-
	Rops2g00834	614	ProSitePatterns	Protein kinases ATP-binding region signature.	161	184	IPR017441	GO:0005524
	Rops2g00834	614	Pfam	Protein kinase domain	155	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g00834	614	CDD	STKc_CDK9_like	155	437	-	-
	Rops2g00834	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	275	287	IPR008271	GO:0004672\|GO:0006468
	Rops2g00834	614	Gene3D	Transferase(Phosphotransferase) domain 1	238	477	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00834	Rops-Chr2	11919094	11925567	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00834	150	553	Core Cell Cycle Gene Families	AT5G10270	39.909	1.09e-96	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Rops2g00834		Pkinase	9e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00834	K08819		-	gmx:102667260	813.142