Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00830 ATGTTGTCAATGCCAATGATGTTTCCAGGTTTGAATAGAGAGAAGGAGATGTCAGTTATGATTTCTGCTTTGACACATGTGATATGTGGAGAAGGGCATGGTGGTGGTGATGATGATGATATGGTTCTTCAACAGAAAATGGATAACAATGCATTTGGAGGAGGTGGTGGTGGTGTTGATGCTTTTGCTGTGACACCAAACATGACTTATGATTCTGCAACACCATCTTCTACTTCTTCATCTCATGGTAGCAGTTCTGTTCTCAAGAGAAGGAGGGAAGATGATGGATCCCCTGCTATTCCTACAATTGCAGAATGTTCAAGCACCTGGACCAGCACAACATCAACAACAGAAACGAGCCAAATATATGAATACAGAACAGAGGATGTGAGAAAGGAAGTGCAACCAAGGAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGTAAGTGGGCTGCAGAGATAAGAGACCCATTCAAAGCAGCTAGAGTATGGTTAGGAACATTTGAATCAGCTGAAGAAGCAGCAAGAGCCTATGATCAAGCTTCATTGCGTTTCAGAGGCAACAAAGCAAAACTCAACTTCCCTGAAAATGTTAGGCTCAGGCAACAACAACAACAACCTTCCCTTAATCCACCACCAATCCATTTGAGTAATTCACATTCTCAAAGTGCCCTTTTTACCATTCCATCTTCCACTGAGCCAATGGTTCACACTGAAGCTCTCCACACTTTGCAGGGTTCTAGTGGTTCAAGCAATTTTTATGACTATCCCCACTTACCCATGAGCCTATATGATCAGATTAATGTGTCATCCAACATGGCTTCTCATCTTCAATCTTCTTCATTTGCTTCTTCTATGACTTCTCCACAAGAAGCTTCAATTCCTTCGCTTTATTCTACCCAAATGCCGGCATGGTATTCATTTTATAGCTACTCTCCCTCTGGTTCTGGTTCTGGCTCTGGCTGA 969 0.4272 MLSMPMMFPGLNREKEMSVMISALTHVICGEGHGGGDDDDMVLQQKMDNNAFGGGGGGVDAFAVTPNMTYDSATPSSTSSSHGSSSVLKRRREDDGSPAIPTIAECSSTWTSTTSTTETSQIYEYRTEDVRKEVQPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFESAEEAARAYDQASLRFRGNKAKLNFPENVRLRQQQQQPSLNPPPIHLSNSHSQSALFTIPSSTEPMVHTEALHTLQGSSGSSNFYDYPHLPMSLYDQINVSSNMASHLQSSSFASSMTSPQEASIPSLYSTQMPAWYSFYSYSPSGSGSGSG* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00830 322 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Rops2g00830 322 Gene3D AP2/ERF domain 138 198 IPR036955 GO:0003700|GO:0006355
Rops2g00830 322 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Rops2g00830 322 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Rops2g00830 322 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Rops2g00830 322 MobiDBLite consensus disorder prediction 102 118 - -
Rops2g00830 322 MobiDBLite consensus disorder prediction 70 118 - -
Rops2g00830 322 Pfam AP2 domain 139 188 IPR001471 GO:0003700|GO:0006355
Rops2g00830 322 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Rops2g00830 322 MobiDBLite consensus disorder prediction 70 85 - -
Rops2g00830 322 FunFam Ethylene-responsive transcription factor 2 138 197 - -
Rops2g00830 322 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Rops2g00830 322 PANTHER DNA-BINDING DOMAIN 89 266 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00830 Rops-Chr2 11868240 11868563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00830 135 200 AP2-EREBP Transcription Factor Family AT5G13330 82.090 2.59e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g00830 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00830 - - gmx:100817546 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00830 2 11868240 11868563 Rops2g00830 2 11868240 11868563 ECH
Rops2g00830 2 11868240 11868563 Rops10g02318 10 40998004 41006254 ECH