Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00825 ATGGACTTCGACGAGTACGAGTATTTGGAGAAGACAGTGGAGGAGCAGCAGGAAGACAAGGATTCATCGAAGAAGAAGAAGAAGAGTAGTGACAGCGCCGACAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTCGACGACGATCTTGACGGAGAAGACAAGCGGAGCAGGAGGTCGAGAGGTGATGACGAGAATGGCTCCTCTAAGAAAGATCGCGATAAGGACAGAGATAGAGACCGCGACCGCGACCGCTCCTCCTCCGGTCGCCACAGGGAGAGGGATGGGGAGAGGAGTAGCAGAGACAAAGAGAGGGATAGGGATAGAGAAAGGGAGAGGGATAGGGATAAGGAGAGAAGAGATAGAGAAAGGGAAAAGGAAAAGGAAAGGGAAAAGGAGATAAAAGAGAAGGAGCGAGAGAGAGAAAGGGACGAGAGAGAGAGATCCAGGAGGAGTAGGAGTCGTTCTGAGAGAGATAGAGATAGAGAAAAAGAGCGAGATTTCGAAACGCGAGATGGCAGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCTTTAAAAGCAACAGAGAGAGATGCATATGAGTTCTTCTCGAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCTATGGCAATTGCTCTCTCTGGGCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCAAATGCTTCCAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTCGACAGAAAATTGTATGTCGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGTGAGATTTTTGAGCCATTTGGTCCGGTTGAGGTTGTACAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCTTCTGTAACAGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCTGACTTGGATGATGATGAAGGTGGATTGACTTTAAATGCCCACTCAAGGGCATTGCTCATGCAAAGGTTGGCTGGGGCTGACATTCCCACAAGCATTGGTGTGCCCATGGTGAATGGGTCAGTCCCTGCTCAGCAGGCTTTGAGCTTGCCTATTGGTAATCCAGGTATCATACCTGCACCAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGTGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACAGAGACAGAACCAGATTTTGATATAGACATAAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGTCGGGTGAAACATATTTACGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCTGTGTTCATGGAACCTCAGTTATATGAAGCCAAGTTTAAAGGGGAATCTTGA 1665 0.4691 MDFDEYEYLEKTVEEQQEDKDSSKKKKKSSDSADKSERSYRKRDVDDDLDGEDKRSRRSRGDDENGSSKKDRDKDRDRDRDRDRSSSGRHRERDGERSSRDKERDRDRERERDRDKERRDREREKEKEREKEIKEKERERERDERERSRRSRSRSERDRDREKERDFETRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADIPTSIGVPMVNGSVPAQQALSLPIGNPGIIPAPVMPTPVVEPVGSPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHMRWFARRLISAVFMEPQLYEAKFKGES* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00825 554 Gene3D - 119 279 IPR012677 -
Rops2g00825 554 FunFam Splicing factor, CC1-like protein 455 554 - -
Rops2g00825 554 CDD RRM1_RBM39_like 194 266 - -
Rops2g00825 554 MobiDBLite consensus disorder prediction 13 192 - -
Rops2g00825 554 FunFam Splicing factor CC1-like 279 384 - -
Rops2g00825 554 MobiDBLite consensus disorder prediction 1 192 - -
Rops2g00825 554 SMART rrm1_1 194 266 IPR000504 GO:0003723
Rops2g00825 554 SMART rrm1_1 296 369 IPR000504 GO:0003723
Rops2g00825 554 SMART rrm1_1 461 538 IPR000504 GO:0003723
Rops2g00825 554 CDD RRM3_RBM39_like 459 541 - -
Rops2g00825 554 Gene3D - 456 553 IPR012677 -
Rops2g00825 554 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 550 IPR006509 GO:0003723|GO:0005634|GO:0006397
Rops2g00825 554 SUPERFAMILY RNA-binding domain, RBD 295 372 IPR035979 GO:0003676
Rops2g00825 554 Coils Coil 116 151 - -
Rops2g00825 554 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 388 478 IPR029123 -
Rops2g00825 554 SUPERFAMILY RNA-binding domain, RBD 456 541 IPR035979 GO:0003676
Rops2g00825 554 Gene3D - 291 387 IPR012677 -
Rops2g00825 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 367 IPR000504 GO:0003723
Rops2g00825 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 536 IPR000504 GO:0003723
Rops2g00825 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 262 IPR000504 GO:0003723
Rops2g00825 554 SUPERFAMILY RNA-binding domain, RBD 186 277 IPR035979 GO:0003676
Rops2g00825 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Rops2g00825 554 Coils Coil 6 26 - -
Rops2g00825 554 FunFam Splicing factor CC1-like 117 278 - -
Rops2g00825 554 NCBIfam splicing factor, CC1-like family 70 550 IPR006509 GO:0003723|GO:0005634|GO:0006397
Rops2g00825 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00825 Rops-Chr2 11822157 11828839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00825 267 368 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 6.33e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00825 K13091 - gmx:100818613 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00825 2 11822157 11828839 Rops10g02320 10 41044343 41051919 ECH
Rops2g00825 2 11822157 11828839 Rops2g00825 2 11822157 11828839 ECH
Rops2g00825 2 11822157 11828839 Rops10g02320 10 41044343 41051919 PCT