Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00818 ATGGATTTGGAGGATTTTCGATCCATATTGGAGAGTATGGGTGTAGATGTTTGGGTTTTGATGGAGACGGCAATTGCGGTGGCTTCCGTCGATCACGGCAACGAATTGAAGCGACGGAGAGACGGAATCGTTGAGCGTCTTTACACGGCGACTGTGTCTGAGCCACCGTGTCGGAACTGTGAAGCCAATAATAATGGAGGAGAAATGAAGAAGCAGAGCAGTCCCTCAACGGAGGAGGAGGAGGAAAAGGATCCTTATGGAGGCTTGTTCGATGATGAACAAAAGAAGATTCAAGAGATTAAAGACCAACTCGAAGACCCTAACCAGTCGGAAGATTCGTTGGTGGAGTTGTTACAGAATCTCGCTGACATGGATATTACATTCCAAGCGTTAGAAGAGACTGACATTGGGAGGCATGTGAATCGTTTGCGGAAGCATTCGTCCAATGATGTTAGGAGATTGGTGAAGCTACTTATCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTCAAGTTGAAGACACCAGGAGAAGCGGCTAATGGTGTCATGGTTGATGAAGACTCGCCTCCACAGAAGATTCCACAAAATGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTTTGGGTTAGATCACAACAATACTGTAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCAAAAACCAGCGCCATCACCATCAGTCCCATTTCCTGCTCCTCAACACAGACAGAGAGAACAGAGAGATAACAATATTGAGTCGGAGAGACTTGCTTCAGCAAGAAAACGGCTTCAAGAGAACTACCAAGAGGCTGCAAATGCCAAAAAGCAAAGAACAATTCAGGTGATGGACCTCCATGAGTTACCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCGGCAGCGGTTCTCAGGGAAGGCAGTGGTGA 966 0.4627 MDLEDFRSILESMGVDVWVLMETAIAVASVDHGNELKRRRDGIVERLYTATVSEPPCRNCEANNNGGEMKKQSSPSTEEEEEKDPYGGLFDDEQKKIQEIKDQLEDPNQSEDSLVELLQNLADMDITFQALEETDIGRHVNRLRKHSSNDVRRLVKLLIRKWKEIVDEWVKLKTPGEAANGVMVDEDSPPQKIPQNGHHQIPDFAYSPNPHNGSFGLDHNNTVAERKPKAIPRKEAPQKPAPSPSVPFPAPQHRQREQRDNNIESERLASARKRLQENYQEAANAKKQRTIQVMDLHELPKPKNAFFGKNKGGSGSQGRQW* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00818 321 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 94 175 IPR035441 -
Rops2g00818 321 Coils Coil 265 292 - -
Rops2g00818 321 MobiDBLite consensus disorder prediction 55 90 - -
Rops2g00818 321 MobiDBLite consensus disorder prediction 253 274 - -
Rops2g00818 321 MobiDBLite consensus disorder prediction 180 321 - -
Rops2g00818 321 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 320 IPR044790 -
Rops2g00818 321 ProSiteProfiles TFIIS N-terminal domain profile. 95 169 IPR017923 -
Rops2g00818 321 CDD TFIIS_I 94 167 - -
Rops2g00818 321 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 91 179 IPR035441 -
Rops2g00818 321 SMART TFS2_5 97 168 IPR003617 GO:0005634
Rops2g00818 321 Coils Coil 114 134 - -
Rops2g00818 321 MobiDBLite consensus disorder prediction 56 72 - -
Rops2g00818 321 Pfam TFIIS helical bundle-like domain 117 166 IPR017923 -
Rops2g00818 321 MobiDBLite consensus disorder prediction 235 249 - -
Rops2g00818 321 MobiDBLite consensus disorder prediction 73 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00818 Rops-Chr2 11732033 11734589 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Rops2g00818 Med26 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00818 - - gmx:100796457 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00818 2 11732033 11734589 Rops2g00818 2 11732033 11734589 ECH
Rops10g02328 10 41119835 41122453 Rops2g00818 2 11732033 11734589 ECH
Rops2g00818 2 11732033 11734589 Rops10g02328 10 41119835 41122453 PCT