Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00812 ATGGCTGATGCTGAGGATATTCAACCCCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCAGGATTTGCTGGTGATGATGCTCCCAGGGCAATATTTCCCAGTATTGTTGGCCGGCCTAGACAGACTGGTGTTATGGTTGGGATGGGTCAAGAGGATGCCTATGATGACATGGAGAAGATCTGGCATCATACATTTTACAATGAGCTTCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTCACAGAGGCTCCTCTCAACCCGAAGGCCAACAGAGAGAAGATGACCCAAATCATGTTTGAGATCTTCAATGTGCCTGCCATGTATGCTGCCATCCAGGCTGTTCTTTCCCTATATGCAAGTGGTCGCACTACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCTCATGCCATCCTTCGTTTGGATCTCGCGGGTCGTGATCTAACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTTTTCGTGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTGTGAGCAAGAACTTGAGGTTGCTTGTGAGCAAGAACTTGAGGTTGCAAAAAGCAGTAACTCAATTGAGAAAGACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCGGAGAGAAAGGATCTATATAGCAACATTGTTCTTAGTGGTGGTTCAACTATGTTCCCTGGTATTGCAGACCGGATGAGCAAGGAGATCACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTAGGTCCACCGGAGAGAAAGTATAGTGTCTGGATCGGAGGATCAATCCTTGCATCTCTCAACACCTTCCAGCAGATGTGGATATCTAAAGGTGAATTCTCTAAAGGTGAATTTGACGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA 987 0.463 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAIFPSIVGRPRQTGVMVGMGQEDAYDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFEIFNVPAMYAAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIFRDIKEKLAYVALDCEQELEVACEQELEVAKSSNSIEKDYELPDGQVITIGAERKDLYSNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVGPPERKYSVWIGGSILASLNTFQQMWISKGEFSKGEFDESGPSIVHRKCF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00812 328 FunFam Actin, alpha skeletal muscle 3 55 - -
Rops2g00812 328 Gene3D - 285 328 - -
Rops2g00812 328 PANTHER ACTIN 238 320 IPR004000 -
Rops2g00812 328 Gene3D - 112 157 - -
Rops2g00812 328 Gene3D - 55 110 - -
Rops2g00812 328 ProSitePatterns Actins and actin-related proteins signature. 80 92 IPR020902 -
Rops2g00812 328 Gene3D Actin; Chain A, domain 4 158 235 - -
Rops2g00812 328 CDD NBD_sugar-kinase_HSP70_actin 10 157 - -
Rops2g00812 328 Pfam Actin 55 238 IPR004000 -
Rops2g00812 328 Pfam Actin 5 46 IPR004000 -
Rops2g00812 328 PRINTS Actin signature 91 104 IPR004000 -
Rops2g00812 328 PRINTS Actin signature 220 236 IPR004000 -
Rops2g00812 328 PRINTS Actin signature 116 135 IPR004000 -
Rops2g00812 328 PRINTS Actin signature 19 30 IPR004000 -
Rops2g00812 328 Gene3D - 3 54 - -
Rops2g00812 328 Gene3D - 236 284 - -
Rops2g00812 328 FunFam Actin, alpha skeletal muscle 56 128 - -
Rops2g00812 328 SUPERFAMILY Actin-like ATPase domain 123 328 IPR043129 -
Rops2g00812 328 SUPERFAMILY Actin-like ATPase domain 6 129 IPR043129 -
Rops2g00812 328 SMART actin_3 7 328 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00812 Rops-Chr2 11663845 11665361 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00812 1 328 Cytoskeleton Gene Families AT5G09810 76.154 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00812 K10355 - psom:113297498 557.37