Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00808 ATGTATGCTTCTACTTCCTTTACTTCACAACTCGTCCATGACCTTCTTGTGGACTTACCCCACACAAGAAGGTTACTCCTTCAAAACCCACTTCACCAATCAACCAACTCCTCATCCTCCATGAACAACCACAATTCAACAACAACAGATTTATATTTTGGAAGTCGTGACTTTGATGCAAATGTTGTCATGATACTAGCTGTCCTATTATGTGCTTTAATTTGCTCACTTGGGTTGAACTCTATCATAAGGTGTGCCTTAAGGTTATCCAACACAGCCATCGACGACCCTTCAAATGGGAACAATAGCCTCTCACCTAGATTGGCCAACACAGGAATCAAGAAGAAAGCTCTTAAAACTTTCCCTACAGTAAACTACTCAGCAGAGTTGAAACTACCAGGTTTGGATTCAGAGTGTGTGATATGCCTCTCAGAGTTTACCAATGGTGATAAGGTGCGCATTTTGCCCAAATGCAACCATGGTTTCCACGTTCGCTGCATTGATAAATGGCTAAGTTCTCACTCATCTTGCCCCAAGTGTAGACAGTGCCTCATTGAGACTTGTCAAAAGATTATTGGGTCACAACCACCTGTGTTGCCGGTGCCAGAAACCATCATAAGGATAGAACCACTAGAACCAGAAGGTGTAGAGCGTAGCTATAGGGAAGTAATTACTAGTATCTTTTAG 687 0.4236 MYASTSFTSQLVHDLLVDLPHTRRLLLQNPLHQSTNSSSSMNNHNSTTTDLYFGSRDFDANVVMILAVLLCALICSLGLNSIIRCALRLSNTAIDDPSNGNNSLSPRLANTGIKKKALKTFPTVNYSAELKLPGLDSECVICLSEFTNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIIGSQPPVLPVPETIIRIEPLEPEGVERSYREVITSIF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00808 228 CDD RING-H2_EL5-like 138 181 - -
Rops2g00808 228 SUPERFAMILY RING/U-box 117 187 - -
Rops2g00808 228 FunFam RING-H2 finger protein ATL73 101 186 - -
Rops2g00808 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 185 IPR013083 -
Rops2g00808 228 PANTHER RING-H2 FINGER PROTEIN ATL78 17 216 IPR044602 GO:0016567|GO:0016740
Rops2g00808 228 SMART ring_2 139 180 IPR001841 -
Rops2g00808 228 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Rops2g00808 228 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00808 Rops-Chr2 11629406 11630273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00808 58 185 C3H Transcription Factor Family AT3G10910 54.135 1.99e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00808 K19040 - gmx:100780127 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00808 2 11629406 11630273 Rops10g01032 10 21912902 21913836 PCT