Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00806 ATGAATGTGATGGATTATGAGCAATTTGATTACTCATTTAGCCCTCCCTTCATGAATCAACTCCATGAGTGTAGCTTAGAAAATGCATTTCCATTCCAGGCAGAAGATCTCTTAGCTCCAAATACAATCCTAGATGAAATGTTTGATCAAGACCAAACAGAAGATCTCTTATCTCCAAATACCATCCTGGATGAAATGTTTGATCAAGAGTCCATGGAGGGATTGCTGCAGCAACATACAAAGAACCAGGACTATGATTTCATGAATCATGGCAAGAATATGGGTCCAGGGAATGAACTGTGTCATGGAGATGTGCATGTTTCAAGGGAAGGGGATTCTTATTTGAAGGGAATTCAAGCAGAGCAATTGGAAGAGACTGGTTTAGTTGATCTCTTACTGACAGGAGCTGAAGCTGTTGAAGCACAGAACTGGACTCTTGCTTTAGACATAATTGAGAAACTAAACAAAGCCTCATCTTTAGAAAAAGAAGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTACTCAGGGTCTGTATTATAAAATCATAAATGCTCCTGAATTGCAGTGTGATTCTGCTCCTACACAGACAAGTACTTTATGTGTGTTTCTTCAGATACTCCAAGAACTGTCTCCCTATGTAAAATTTGCTCATTTCACTGCCAACCAAGCAATCTTTGAAGCTACAGAAGGTGCTGAGAATGTTCACGTCATTGATTTTGACATCATGGAGGGTATCCAGTGGCCACCATTAATGGTTGACCTTGCAATGAGAAAGGGTACTTCCCTTAGAGTAACAGCCATCACAGTGGACCAGCAAAGTGCAGCTTCTGTTCAACAAACAGGAAGAAGGCTTGAAGAGTTCGCTGCTTCTATCAATTTTCCATTCATGTTTGATCAGATAACGATGGTGAGTGAAGAAGATTTTCAAAGAATTGAACTTGGTCATACACTTATAATAAACTGTATGATACACCAGTGGATGCCAAACAGGAGTTTCTCATTGGTCAAAACTTTTCTAGATGGTGTAAGCAAATTGTCACCTAGGCTTGTTGTTCTAGTGGAAGAAGAACTGTTTAATTTTTCTAGACTGAAATACATGACCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACACTGCACTTTTTGATTCACTTGCTAGTAGTATGTGGGGTAGCCACAAGATAGAGTTAGCCCTGATAGAAAAAGAGGTTCTGGGTCTTAGAATCTTAGACAGTGTAAGACAGTTTCCTTGTGAAAGAGAGGAGAGAATACTGTGGGAAGAAGGGTTTTATTCCTTGAAAGGGTTTAAACGTGTTGGTATGAGTACCTCTAATATTTCGCAAGCCAAGTTCTTGGTCAGCCTGTTTGGTAAAGGGTATTGGGTACAATTTGAGAAGTGTAGGCTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGCAGCTTCAATCTGGGTACCAGCAGCTGATCTGAGTGACAAGCTCAAATAA 1494 0.4016 MNVMDYEQFDYSFSPPFMNQLHECSLENAFPFQAEDLLAPNTILDEMFDQDQTEDLLSPNTILDEMFDQESMEGLLQQHTKNQDYDFMNHGKNMGPGNELCHGDVHVSREGDSYLKGIQAEQLEETGLVDLLLTGAEAVEAQNWTLALDIIEKLNKASSLEKEDSLLNRLALFFTQGLYYKIINAPELQCDSAPTQTSTLCVFLQILQELSPYVKFAHFTANQAIFEATEGAENVHVIDFDIMEGIQWPPLMVDLAMRKGTSLRVTAITVDQQSAASVQQTGRRLEEFAASINFPFMFDQITMVSEEDFQRIELGHTLIINCMIHQWMPNRSFSLVKTFLDGVSKLSPRLVVLVEEELFNFSRLKYMTFVEFFCEALHHYTALFDSLASSMWGSHKIELALIEKEVLGLRILDSVRQFPCEREERILWEEGFYSLKGFKRVGMSTSNISQAKFLVSLFGKGYWVQFEKCRLALCWKSRPLTAASIWVPAADLSDKLK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00806 497 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 109 482 IPR005202 -
Rops2g00806 497 ProSiteProfiles GRAS family profile. 119 487 IPR005202 -
Rops2g00806 497 Pfam GRAS domain family 128 486 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00806 Rops-Chr2 11594848 11596341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00806 121 486 GRAS Transcription Factor Family AT5G41920 33.420 1.23e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops2g00806 GRAS 2.6e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00806 - - lja:Lj0g3v0198459.1 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00806 2 11594848 11596341 Rops2g00806 2 11594848 11596341 ECH