Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00801 ATGCTTAGAGACGATCTATACATCACGGTTCCTAGCTTTTTCCGGTGTCCCATATCGCTTGACGTGATGAAATCCCCTGTGAGTCTATGCACCGGGGTTACCTACGACCGTTCCAGCATCCAACGGTGGCTCGACGACGGTAACAACACGTGTCCCGCCACCATGCAGGTTCTTCACAGTAAGGAAATCGTTCCTAACCGTACCTTACAGAGGCTTATCCAGATCTGGTCCGACTCGGTTCGCCAACGAGTCGACTCGGACGAGTCACCAGCCGCAACTGAATCGGTCCCTTCCCGTGACCAACTCCTCATCGCCATCACCGAGTTAGAGTCCAGTAGCGATAACCGGTTCGACTCTCTCGAGAAAATCGTGAGTTTCGCACAAGATTCCGAGGAGAATCTCGATTTTCTAGCGAGAACGAAAGGCTTCGTCCCCGTGCTGGTTGGTTTCCTCGGCAATGTCAATGGCGGAGTGCAACGGAGCGTTGAATTCATCGAACTCGTTATTAAGGCTTTGGATTTGGTTGTAAGTAAAATGGAAAATCGTGAGGAGTTGAAAAACTCGATGCTGAAAAGCCAGGGACAGAGCATAGATTCTCTGCTGCTTGTTCTGCAACAAGGAAGCTCTGACGCAAGGATTGCATCGGCTAGGGTTTTGAAATCCATCGCCATAGACGCAGAATCAAAGCTTTTAATAGCAGAAAACGAAGCCGTTTTATCTGAATTGCTGAATCTAATCACGCCAGAGAAAGATCCAAATCTAATCGAGAACGCCTTGTCGTGCTTGATCGCAATCTCAACGCCGAAACGGAACAAAGCGAAGCTGGTCCGTCTCGGAGCAGTGAAGGTGTTCTCGAACCTTCTTTCGGCGTCAAATTTGAGCGTTTCGGTTACGGAGAAGGTGCTGAAGTTGGTCGAAACGGTGTCGTCTACGAAGGAAGGAAGGTCCGAGATATGTGAAGAATCGTCGTGCGTGGCAGCGATAGTGAACAAGGTTTTAAAGGTGTCCAGCGTGGCAACGGAGCACGCCGTTACGACGCTGTGGAGTGTGTGTTATCTGTTTAGGGATCAGAAGGCACAAGAAGCGGTTACGAAGGCCAACGGTTTGACGAAGATTTTACTTCTGATGCAGAGTAATTGTTCTCCACAAGTGCGCCAAATGTCTGCGGATTTGCTTAAGATCTTTCGGGTTAACTCTAAGTCATGCCTTTCTTCCTATGACACCAAAACCACACATATTATGCCCTTTTGA 1251 0.4884 MLRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLHSKEIVPNRTLQRLIQIWSDSVRQRVDSDESPAATESVPSRDQLLIAITELESSSDNRFDSLEKIVSFAQDSEENLDFLARTKGFVPVLVGFLGNVNGGVQRSVEFIELVIKALDLVVSKMENREELKNSMLKSQGQSIDSLLLVLQQGSSDARIASARVLKSIAIDAESKLLIAENEAVLSELLNLITPEKDPNLIENALSCLIAISTPKRNKAKLVRLGAVKVFSNLLSASNLSVSVTEKVLKLVETVSSTKEGRSEICEESSCVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00801 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Rops2g00801 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Rops2g00801 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Rops2g00801 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Rops2g00801 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Rops2g00801 416 Gene3D - 294 395 IPR011989 -
Rops2g00801 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Rops2g00801 416 Gene3D - 103 293 IPR011989 -
Rops2g00801 416 CDD RING-Ubox_PUB 11 62 IPR045210 -
Rops2g00801 416 SUPERFAMILY ARM repeat 110 398 IPR016024 -
Rops2g00801 416 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00801 Rops-Chr2 11513747 11515362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00801 1 416 U-box Gene Family AT5G64660 54.225 2.32e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00801 - - cam:101496984 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00801 2 11513747 11515362 Rops2g00801 2 11513747 11515362 ECH
Rops10g01027 10 21842528 21844084 Rops2g00801 2 11513747 11515362 ECH
Rops2g00801 2 11513747 11515362 Rops10g01027 10 21842528 21844084 PCT