Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00800 ATGCTGAGCTCTGATGATGGAGATATTGATGTATTCTTCGACTCAGTGGATAGTTTTTCAGCTCAAGATTCTGTTTTAGCCAAAGAAGACTTTGTTTCTGAAAGGTGTCGTTATGATTATGATGAAATTTGGGTGAATGAGCCTGTTAGTGTGAAGGAAAGAAGGGAACGTTTTCTGCAGGGTACGGGTTTGGGTTTATTAGCTGATACTTCATCCAAGCTTTGCTCACAAGAGAAAATGATAAGCTTTGATGACTCATCCATCAGCTTGGGACTGGCGAGGATCATGGAGTGCAGTGGAGCAATCTCAAATGCTTGCATTTCACCAACTGATCAAGTATCTGAGAAGTTGGTTCTCTCTGAAGAAGAAGTCTTGTTGGATGAACTGAAAGGATGTCACCACCAGGATGAAGCAGATGCAAGTTTTCAAGGGAAGGTGCATGAGCGCTCTTCTACACCTCAGGAGCGCGCACACAAAGAAGCTGAGCCCCAAGAAGAATTTCAGGGTGTTGACATTGGTAAAAATAAAAGGAAAAACTGGTGGAAGCGTTTTGTGAACATCAGGAAATGTGATGAAGGTAAAGTCAGATCAAAATTGAATTCAGGGACAAAGAAAACTCGTAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTCAGTGGGTTATATATTGGACAAGAGATTAGAGCGCACAAAGGCCTAATCTGGACTATGAAATTTAGTCCCAATGGTCAGTATTTAGCTAGTGGAGGTGAAGATGGTGTTGTTCGCATATGGCGTATTATATCACTAGATGCATCCAGGATTTGTTTCACTGCAGAAGGCAGTACAGCCAGTAGCGAAGTTAAACATGACAACTCTTATCCTTGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAATACTTTTCAAATTGAGGAATCACCCCTGCAAGAATTCTTTGGTCATTCCAGTGAAGTCTTGGATTTGGATTGGTCAAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGCATGTGGCAAATTGGTTGTAATCAATGTCTACATGTTTTCAATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGGTCCATTGATGGTAAAGTTCGAATATGGGGGATACGCGAAGAGCGAGTTGTTGACTGGACAGACATTAGAGATGTCATAACTGCTATAAGTTACCAGCTAGATGGAAAAGGATTTGTAGTTGGTTCTATTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCACAGATAGATGTCAGTGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCTCAAAAAAACAGTCAGAGAATTATGATCACATCAGAAGATTCCAAAATTCGCATATTGGATGGCATTGAGCTTGTTCAGAAATACAGAGGCCTTCCTAAGTCTGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGTGAGGATTCACATGTCTATATTTGGAACTACAATGACTTGGGAAATGCTTCTAGCAATAATTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCAATACCTTGGCCAGGCATGAAAGCAGATCAAAGGGGCTCTAGCAATAATTTTTCCCACCATTCTTCAGAAACACAAACCCAACAACTAGAGCTTGCTCCTGAGGTTAGAGATTCAGAACGATTTTCTCTAGGTAATTGGTTCTCCATTGATGGTACGTGCCGAGGTTCTACGACATGGCCTGAGGAGAAACTTCCAAGCTGGGATTTACCTCTTGAAGAAGATGAATATGATCAACACCAGCAGTTATGTGACAAAGATACTAGCCATTACAAAAGTGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTCATGATGGAACTATCAAGACATTCCAGAACTTTGGATTGCCAGTTAGGCTTTAA 2016 0.4048 MLSSDDGDIDVFFDSVDSFSAQDSVLAKEDFVSERCRYDYDEIWVNEPVSVKERRERFLQGTGLGLLADTSSKLCSQEKMISFDDSSISLGLARIMECSGAISNACISPTDQVSEKLVLSEEEVLLDELKGCHHQDEADASFQGKVHERSSTPQERAHKEAEPQEEFQGVDIGKNKRKNWWKRFVNIRKCDEGKVRSKLNSGTKKTRRIKVRQNKKRWLEFSGLYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRIISLDASRICFTAEGSTASSEVKHDNSYPWKKHSSQPFIFLPNNTFQIEESPLQEFFGHSSEVLDLDWSNSDILLSSSMDKTVRMWQIGCNQCLHVFNHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVVDWTDIRDVITAISYQLDGKGFVVGSITGTCRFYVASGKYFQLEAQIDVSGKKKASGNKITGIQFSQKNSQRIMITSEDSKIRILDGIELVQKYRGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWNYNDLGNASSNNSCEYFFSKGVTVAIPWPGMKADQRGSSNNFSHHSSETQTQQLELAPEVRDSERFSLGNWFSIDGTCRGSTTWPEEKLPSWDLPLEEDEYDQHQQLCDKDTSHYKSVSETWGLSIVAAGHDGTIKTFQNFGLPVRL* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00800 671 Pfam WD domain, G-beta repeat 313 348 IPR001680 GO:0005515
Rops2g00800 671 Pfam WD domain, G-beta repeat 354 390 IPR001680 GO:0005515
Rops2g00800 671 Pfam WD domain, G-beta repeat 229 261 IPR001680 GO:0005515
Rops2g00800 671 Gene3D - 222 546 IPR015943 GO:0005515
Rops2g00800 671 SUPERFAMILY WD40 repeat-like 225 662 IPR036322 GO:0005515
Rops2g00800 671 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Rops2g00800 671 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Rops2g00800 671 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Rops2g00800 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 263 - -
Rops2g00800 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 358 IPR001680 GO:0005515
Rops2g00800 671 SMART WD40_4 484 525 IPR001680 GO:0005515
Rops2g00800 671 SMART WD40_4 352 391 IPR001680 GO:0005515
Rops2g00800 671 SMART WD40_4 393 432 IPR001680 GO:0005515
Rops2g00800 671 SMART WD40_4 223 262 IPR001680 GO:0005515
Rops2g00800 671 SMART WD40_4 311 349 IPR001680 GO:0005515
Rops2g00800 671 SMART WD40_4 443 483 IPR001680 GO:0005515
Rops2g00800 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 263 IPR001680 GO:0005515
Rops2g00800 671 MobiDBLite consensus disorder prediction 140 166 - -
Rops2g00800 671 FunFam WD repeat-containing protein 44 214 552 - -
Rops2g00800 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 400 IPR001680 GO:0005515
Rops2g00800 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
Rops2g00800 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 393 - -
Rops2g00800 671 PANTHER WD REPEAT DOMAIN 44 7 668 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00800 Rops-Chr2 11475058 11479453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00800 315 522 U-box Gene Family AT2G33340 27.064 7.83e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00800 K20241 - gmx:100819135 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00800 2 11475058 11479453 Rops2g00800 2 11475058 11479453 ECH
Rops2g00800 2 11475058 11479453 Rops10g02133 10 38612387 38617408 PCT