Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00796 ATGGAGAGCAACCAGAATAACACTAGTACTTCATTCACAAATGTTAACAGCACTTGGAATCTTGAGAAGATGGAAACAAATGAACAAGAGCATACAATTCTCCAAGTCCAAGATCACCAAATCCCTATGGTTTCTGCAATTTGGCCAAACTACAACCCCTTTCAAATGCCATCTTCATCCAACTTAGCACCCTCTTCAACAGGTTCCCTCAATGATATATTAGGAGTCAACAACAACATAGAAGAAAATGAGGAAGCAGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCAGTGGACATTGATCCAGCCTCAATCAGAAAGCCAAAGAGAAGAAACGTTCGGATTAGCGACGACCCACAAAGCGTGGCAGCACGGCATAGAAGAGAAAGGATCAGTGAGAAAATCCGCATCCTTCAAAGACTAGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGATGAAGCTATTCGTTATGTCAAGTTCTTGAAGAGACAAATTAGGTTGCTTCAATCCACTCCTCAAACCCAACAACAACATCAACACATTCCACAACCACCACAATGCATTGTTCCTTCTACTACTCCTCCAACCACTTTCTTATTACCCCCTACTTGTGATTGGCCTTTTGCACCACCAAATATATTCCTCACCACCACCACCACCGTCACTGACATGGCAGCCGGAGGCCATGGCCATGCCTGTGATGCCTCCTCCACCTTGAATCATCATGAGGTAATTAGTGGTTGA 777 0.444 MESNQNNTSTSFTNVNSTWNLEKMETNEQEHTILQVQDHQIPMVSAIWPNYNPFQMPSSSNLAPSSTGSLNDILGVNNNIEENEEAEEELGAMKEMMYKIAAMQPVDIDPASIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQTQQQHQHIPQPPQCIVPSTTPPTTFLLPPTCDWPFAPPNIFLTTTTTVTDMAAGGHGHACDASSTLNHHEVISG* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00796 258 CDD bHLH_AtIND_like 124 179 - -
Rops2g00796 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 196 IPR045843 GO:0003700|GO:0006355
Rops2g00796 258 SMART finulus 129 178 IPR011598 GO:0046983
Rops2g00796 258 Gene3D - 126 193 IPR036638 GO:0046983
Rops2g00796 258 Coils Coil 76 96 - -
Rops2g00796 258 Pfam Helix-loop-helix DNA-binding domain 133 172 IPR011598 GO:0046983
Rops2g00796 258 FunFam BHLH transcription factor 126 190 - -
Rops2g00796 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Rops2g00796 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00796 Rops-Chr2 11396254 11397030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00796 92 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 82.022 3.24e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g00796 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00796 - - gmx:100777351 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00796 2 11396254 11397030 Rops2g00796 2 11396254 11397030 ECH
Rops2g00796 2 11396254 11397030 Rops10g01016 10 21717006 21717794 PCT