Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00787 ATGGCCAAAATGAAATTGATTCCGGGGTTTCGGTTTCATCCCACTAGTGTTGAGTTGGTTAAGTACTTTCTGAAGAGGAAAGTGATGGGGAAAAAGTTCCATGATGATGTCATTGCTGAACTTGACATATACAAGTATGCTCCTTGGGATCTCCCAGATAAATCTTATCTGAGAACTGGGGATTTAGAATGGTACTTCTTCTGCTCGAGAGAGAAGAAATATGGAAGTGGGGTGAGGATGAATCGGGCTACTGAAATTGGGTATTGGAAAGCTACTGGGAAGGATAGAGCTGTTCAACAAAGTAATCAAACTGTGGGGATGATAAAAACTTTGATATTTCACACTGGTAAAGCACCTCATGGTGAACGAACGAATTGGGTTATGCATGAGTACAGGCTTGAAGATAAAGACCTCACTGACAAAGGAATTGCTCAGGATTCCTATGTGATATGTAAAGTATTCCAAAAGGAAGGCCTTGGTCCCAGGAATGGTGCACAATATGGGAGACCCTTCAATGAGGAAGACTGGAATGACGAAGAAGCTGGAATACCTTTTGCTGATTCGTTTGCACCAGTTCCCATCTTGCCTATAACATCTAATAGCTCTATTCCAAATGACCCGCATCTCCCTGCTAGTGGATGTAATGGGTCAAGATCCACATCATGTATATCAGGATTGATGCCTTCTCCTGGTTTAGTGAATCCTTCACATCCGAGCAATCAAGCTGTTAACAATGACAATGATAATGTTATTCTATCAATGCTTGACATTTTCAAAGAAGAAGACACGATGCCTGAGAAGGTTGATAATCCTGGTCCCGAAAATATTGCTGAAGTTGCACCGTTTAGTGACTTTTTTGAGGGCTGCTTGGGAGACCTGGATGACTGGGCTGCGGTGGGTGGTTTCTCCTCTGACCAGAATGCTGCATCTAGGAATAATGGAATGGCTACTACGGATGATGTTGTGGAGTTTGGCGACTTGGAGTTCATGGAGTTGATTGACCTTGACTCTCCATTGTTCTGGCAAACTACACAACCTGAAAGCTGGGATCGAGATAAATAG 1062 0.4294 MAKMKLIPGFRFHPTSVELVKYFLKRKVMGKKFHDDVIAELDIYKYAPWDLPDKSYLRTGDLEWYFFCSREKKYGSGVRMNRATEIGYWKATGKDRAVQQSNQTVGMIKTLIFHTGKAPHGERTNWVMHEYRLEDKDLTDKGIAQDSYVICKVFQKEGLGPRNGAQYGRPFNEEDWNDEEAGIPFADSFAPVPILPITSNSSIPNDPHLPASGCNGSRSTSCISGLMPSPGLVNPSHPSNQAVNNDNDNVILSMLDIFKEEDTMPEKVDNPGPENIAEVAPFSDFFEGCLGDLDDWAAVGGFSSDQNAASRNNGMATTDDVVEFGDLEFMELIDLDSPLFWQTTQPESWDRDK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00787 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 229 - -
Rops2g00787 353 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Rops2g00787 353 FunFam Nac domain-containing protein 86 15 159 - -
Rops2g00787 353 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Rops2g00787 353 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Rops2g00787 353 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00787 Rops-Chr2 11284745 11287937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00787 1 343 NAC Transcription Factor Family AT5G09330 45.152 2.59e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g00787 NAM 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00787 - - gmx:100778933 444.506