Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00780 ATGCCGGCTTGGTGGAATAGAAAGTCGAGCAAGAACAAGCAGGAGCATGATGATAATGAAGAGGAGGAAGAGGAAGAAGAACAACAACAGCAACGTGGGGGGCTTCAATTTAATTTCATGAAATCACCTATTACCATAAGGAACAGTGATAAGAAGAATAAGAATAAGGATAAGAAGAAAAAGAAGCGTAAGAGTTTTGATGAACTTTTTCTCTCTCGGAATTCACCTAGGAGTAGCAAGGATTTTGATGGCGGCGCCGCCACAGAGAAGAAAGGGGTTCCTTTGCCACGCCCCACCAACTCCGATCAGGTCGTTGGATCTTTTTCAATCTCTGGTTCCAGCACCAGTTCCTCTGTTTCCTATGATGATCATCCAATCTCTCCTCAATTCAGTTCCAATAGAGGACAAGACGAGGTGAAGTTCAATGTGAGGTCAAAAAGCCCAGGTCCTGGGTCAAGGGGACCCACCAGCCCTACCTCACCTCTTCATCCAAGGTTGCATGCTTTGAGTCTTGACTCTCCTACAGGAAAGCAAGATGAAGGAAGGAGTCAAGGTCATCCACTGCCTCTTCCGCCAGGCTCTCCTACTAGTCCTTCTGCTCTTTCAAATGCAAGGGCAAATGGACTGTTCGAAAACGCTACTGGTAATCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGCCGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAGTGAAAAAGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTTTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTTAATCAGCTTTCACACCCAAACATTGTTCAATACTATGGGAGTGAACTGGGAGAAGAATCACTTTCTGTTTATTTGGAATTTGTCTCTGGTGGTTCTATCCATAAGTTACTTCAGGAATATGGTCCATTCAATGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTACATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAACATATAAGTTCTTCTGCGTCGATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCAGTTGACATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCATCTTTCAAATGATGCAAAGAACTTCATTAAGCAATGTTTAAATAGGGACCCATTAGCTCGACCAACAGCCCAAAAGTTACTAGACCACACCTTCATTCGAGATCAATCAGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGATGCTTTCCCTTACATGTGTGATGGAAGCCGAACACCGCCTGTTTTAGAGCCTCATTCCCATCGAACTAGTATAACTTCACTTGATGGTGGAGATTACACAACAAAGCCAGCTTTTGCAGCTCTACGTGCATTAAGGAGTCCAAGAGATAACGCAAGAACGATCACATCATTACCAGTATCTCCCTCTTCAAGTCCATTGAGACAGTATGGCCCTACACATAAGAGCGGTTTCTATTCTCCTCCTGATCCATCTTACACACTAGTGGGACGAAATAGTTACACCATGAATGACATGCCCTCATACCCTGTGAGATCAAATGCCACATTTATTGATCCTTGGCTTGACACATCTCGATACAAAGCTCGTACCCCACCTGGTGGATCTCCAAGAATGAGACTCATCTGA 1881 0.4322 MPAWWNRKSSKNKQEHDDNEEEEEEEEQQQQRGGLQFNFMKSPITIRNSDKKNKNKDKKKKKRKSFDELFLSRNSPRSSKDFDGGAATEKKGVPLPRPTNSDQVVGSFSISGSSTSSSVSYDDHPISPQFSSNRGQDEVKFNVRSKSPGPGSRGPTSPTSPLHPRLHALSLDSPTGKQDEGRSQGHPLPLPPGSPTSPSALSNARANGLFENATGNLSKWKKGKLLGRGTFGHVYLGFNSEKGQMCAIKEVRVFSDDQTSKECLKQLNQEINLLNQLSHPNIVQYYGSELGEESLSVYLEFVSGGSIHKLLQEYGPFNEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHISSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKQCLNRDPLARPTAQKLLDHTFIRDQSATKAANVSITRDAFPYMCDGSRTPPVLEPHSHRTSITSLDGGDYTTKPAFAALRALRSPRDNARTITSLPVSPSSSPLRQYGPTHKSGFYSPPDPSYTLVGRNSYTMNDMPSYPVRSNATFIDPWLDTSRYKARTPPGGSPRMRLI* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00780 626 MobiDBLite consensus disorder prediction 545 562 - -
Rops2g00780 626 SUPERFAMILY Protein kinase-like (PK-like) 218 557 IPR011009 -
Rops2g00780 626 Gene3D Transferase(Phosphotransferase) domain 1 217 496 - -
Rops2g00780 626 Pfam Protein kinase domain 221 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00780 626 FunFam Mitogen-activated protein kinase kinase kinase 218 500 - -
Rops2g00780 626 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 8 484 - -
Rops2g00780 626 MobiDBLite consensus disorder prediction 545 570 - -
Rops2g00780 626 ProSitePatterns Protein kinases ATP-binding region signature. 226 249 IPR017441 GO:0005524
Rops2g00780 626 CDD STKc_MEKK1_plant 219 476 - -
Rops2g00780 626 MobiDBLite consensus disorder prediction 100 138 - -
Rops2g00780 626 ProSiteProfiles Protein kinase domain profile. 220 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00780 626 MobiDBLite consensus disorder prediction 31 46 - -
Rops2g00780 626 Coils Coil 6 32 - -
Rops2g00780 626 SMART serkin_6 220 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00780 626 MobiDBLite consensus disorder prediction 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00780 Rops-Chr2 11106911 11111603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00780 1 540 MAP Kinase Kinase Kinase AT1G53570 57.118 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops2g00780 Pkinase 1.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00780 K04421 - gmx:100787064 879.396