Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00777 ATGAACGAATCTCAAAATAACATTCCCCACTTATTCAGATGCCCCATCAGTTTAGACTTGTTTGAAGATCCTGTAACTTTATGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGTTGGCTGCTGGCAATTTCACATGTCCTGTCACAATGCAGAAGCTCCATGATCCATCCATTGTTCCCAATCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTTCCCAGGTTGAACCTGGTAACTCTTCAACTGAAACTATTGATCCTTTAGCTGCTCTCAAATGCACCCTTGAATCTCAGGAGGACAGCTTAGAGAACAAGCTCCAAGCACTTGAGAAAATCAGACACTTATCTGATGAGTATTGTTCTTTTAAGAGATCATGTTTCCTGCAATTGGGTTTCTTACCACTACTTCTGGAACTAGTTTTTGGAAGAACAGAAGCTCAAGTATCAAAAGATCAAATGCACTTCATAGAGCTAGCAATTCATTGCATTCTAAAATTGCTGCCTCTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAATTAGCCACATTTCTGCTATTATTTGAAAAAGGTACAAGCTCCATTAAAACTAGCTTGTGTCATCTTATAGAGTCAACATCATCATCTCAGACAGAAGAGTTATGTTGTATTCTTGGAAACTCTCACAAACTAGTGCATGAGATTGTTCTAGCTGTTTGCCAAAATAACCAACTTTCTGAAGATGCAATTAAAGGCATGTCAGCACTATGTTCATTGCAATCTAACAGAGAGAGTTTAGTGAGAGAAGGAGCAATAGATGCAATCATGACATACATTTCATCAGGTTCTGAAAGAAGACAGAAAATCTTGGCACCACTGGCAATGGGAATAGTAGAGAAACTTATGGAGCTAGATAATGCTAAAGTGGCATTGGTGAACCACCATAATGGTATTAAAACTTTGGTCAATATAGTTTTCAGGGTATCTGATCAAGAATGCAGTGGAAGTGCTGTGGAGATACTTTTAATTGTTTGTAGTGATTTTGAGCGTGCAAAAGAGGAAGCCATTGGGGCTGGAGTTTTGACTCAGTTGCTATTTCTTCTGCAGAGTCAATGTAGTACCACAACAAGATCAAAGGCAAGAATGCTGCTCAAATTGCTAAGATCCAAGTTGACTGAGGAGCCAAAGCAGGGGTAG 1203 0.3965 MNESQNNIPHLFRCPISLDLFEDPVTLCTGQTYDRSNIEKWLAAGNFTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGSQVEPGNSSTETIDPLAALKCTLESQEDSLENKLQALEKIRHLSDEYCSFKRSCFLQLGFLPLLLELVFGRTEAQVSKDQMHFIELAIHCILKLLPLGSLEPLNMIKDESKLATFLLLFEKGTSSIKTSLCHLIESTSSSQTEELCCILGNSHKLVHEIVLAVCQNNQLSEDAIKGMSALCSLQSNRESLVREGAIDAIMTYISSGSERRQKILAPLAMGIVEKLMELDNAKVALVNHHNGIKTLVNIVFRVSDQECSGSAVEILLIVCSDFERAKEEAIGAGVLTQLLFLLQSQCSTTTRSKARMLLKLLRSKLTEEPKQG* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00777 400 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Rops2g00777 400 Coils Coil 94 121 - -
Rops2g00777 400 Gene3D - 217 398 IPR011989 -
Rops2g00777 400 PANTHER WDSAM1 PROTEIN 6 397 IPR045185 GO:0061630
Rops2g00777 400 SUPERFAMILY ARM repeat 102 388 IPR016024 -
Rops2g00777 400 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Rops2g00777 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Rops2g00777 400 CDD RING-Ubox_PUB 9 56 IPR045210 -
Rops2g00777 400 FunFam RING-type E3 ubiquitin transferase 8 80 - -
Rops2g00777 400 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Rops2g00777 400 SUPERFAMILY RING/U-box 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00777 Rops-Chr2 11081401 11082603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00777 8 375 U-box Gene Family AT3G19380 32.987 1.04e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00777 - - gmx:100815247 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00777 2 11081401 11082603 Rops2g00777 2 11081401 11082603 ECH