LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00773	ATGAAGGTGCAAGGCTGTGAGGTTGAGGCAATTGGCATCAACTACAAGATCCACACACACAAAACTGAGCACCCTTTTAAAATCTTCAGCAAATCTCCACAACTGGATGCTGAAGGAGATGATCAAGAACCAGAAAAGGAAGCAAAAGCTGAAAACAGTTGCAGTGGAGTGAGGCATGTGCTCAAGAATGTGAGTTGCCAAGCCAAGCCATGGGAAATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGAAAATCATCATTGCTTGAGATTCTTGCTGGTAAACATAGTCCACACCGTGGGACTGTGTTCTTGAACCAGAAGCCTGTCGACAAGGCTCAGTTCAGGAAGCTTTCAGGGTATGTTACACAAAAGGATACTCTGTTTCCCTTACTTACCGTTGAAGAAACCATGATGTTTAGTGCAAAGCTAAGGCTAAAGCTTCCTCAAGAACAACTTTGCTCCAGGGTGAAGTCACTGATTCAGGAGCTTGGACTTGATCATGTTGCTGGGACTCGAATTGGTGATGAAAGGGTCCGAGGTATATCTGGTGGAGAGAGGCGCAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGGCTTGACAGTACTTCTGCTCTGCAAATAATTGATATGCTTAAGGTCATGGCTGACACTAGGGGCAGAACTATAATCCTTAGTATCCATCAACCGGGATTCAGAATAGTGAAGCTATTTAATTCATTGTTGTTGTTGGCCAATGGCTGTGTGTTACACCATGGCACTGCAGATTTGCTGGGTGTGAATCTAAGATTAATGGGTCTAGAGCTTCCCCTTCATGTTAATGTAGTTGAATTTGCTATTGATTCCATTGATACCATTCAGCAACAACAAAAGTGTCAGCTAGTTCAGCTAGAAAAGCCAAAGCAATTGCAAGGGACAATGCAACAGAAGAAAGGTGATGATGAACCAGGTGAGGGTAAAAGTGGTAAGTTAACTTTGCAACAGCTCTTTCAACAATCCAAGGTAATTGATGAAGAAATCATCAATGCTGGAATTGAATTCTCTTGTGATTATGCTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCTTTCGTACAAAAGAGCTCTTTGCATGTAGGACAATTCAGATGCTGATTTCTGGGCTAGTTTTGGGGTCCATCTTTTGTAACCTCAAGGATGGTCTCGAGGGAGCAGAAGAAAGGGTTGGTCTATTTGCTTTCATATTAACATTTTTGTTATCGAGCAGTATAGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACATCTTGTGGAAGCTACCGTGTGTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTCATCCTAGCCATTTTGTTCTCAATGCCCTTATATTGGCTTGTTGGGCTCAACCGGAATTTCATGGCGTTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTATACAGCCAATTCGGTTGTGGTGTGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGAAATTCAGTGATTTCTGGTGTTATAGGGTCTTTCTTCTTGTTCTCTGGTTACTTTATATCAAAGCATGAAATTCCAAATTACTGGATTTTCATGCATTATATATCTCTGTTTAAGTATCCCTTTGAAGGGTTCCTGATCAATGAGTTCTCCAACTCAAGGAAGTGCCTGGAGTACATGTTTGGTGCATGTATGATGAGGGGAGAAGATGTGCTTAAAGAAGAAGGTTATGGAGGAGAGAGTAGTAGGTGGAAGAATGTTGGGGTCACAGTGTGCTTCATCTTGGTTTACAGGTTCATTTCTTACGTTATTCTTAGATACAGATGCTCACAGAGGGGGTTCAGCAGTGCTGCCATCATCTAA	1947	0.4171	MKVQGCEVEAIGINYKIHTHKTEHPFKIFSKSPQLDAEGDDQEPEKEAKAENSCSGVRHVLKNVSCQAKPWEILAIVGPSGAGKSSLLEILAGKHSPHRGTVFLNQKPVDKAQFRKLSGYVTQKDTLFPLLTVEETMMFSAKLRLKLPQEQLCSRVKSLIQELGLDHVAGTRIGDERVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLFNSLLLLANGCVLHHGTADLLGVNLRLMGLELPLHVNVVEFAIDSIDTIQQQQKCQLVQLEKPKQLQGTMQQKKGDDEPGEGKSGKLTLQQLFQQSKVIDEEIINAGIEFSCDYANSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDGLEGAEERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSMPLYWLVGLNRNFMAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVIGSFFLFSGYFISKHEIPNYWIFMHYISLFKYPFEGFLINEFSNSRKCLEYMFGACMMRGEDVLKEEGYGGESSRWKNVGVTVCFILVYRFISYVILRYRCSQRGFSSAAII*	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00773	648	ProSitePatterns	ABC transporters family signature.	181	195	IPR017871	GO:0005524\|GO:0016887
	Rops2g00773	648	Pfam	ABC-2 type transporter	370	578	IPR013525	GO:0016020\|GO:0140359
	Rops2g00773	648	MobiDBLite	consensus disorder prediction	34	52	-	-
	Rops2g00773	648	FunFam	ABC transporter G family member 5	46	306	-	-
	Rops2g00773	648	MobiDBLite	consensus disorder prediction	33	52	-	-
	Rops2g00773	648	Pfam	ABC transporter	61	209	IPR003439	GO:0005524
	Rops2g00773	648	SMART	AAA_5	70	267	IPR003593	GO:0016887
	Rops2g00773	648	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	45	282	IPR003439	GO:0005524
	Rops2g00773	648	Gene3D	-	48	320	IPR027417	-
	Rops2g00773	648	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	58	267	IPR027417	-
	Rops2g00773	648	CDD	ABCG_EPDR	55	264	-	-
	Rops2g00773	648	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	27	628	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00773	Rops-Chr2	11029236	11031525	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00773	59	287	Calmodulin-binding Proteins	AT2G36910	22.449	1.09e-13	72.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00773	K05681		-	gmx:100789722	1124.77