Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00767 ATGGAAGATGAGAGTCATAATAACAGTTTGCCAAATGGTTTCACCACTGGAAGCCCTGAAAGTCCTTGCTTAAAAACAAGCACCAACACCACCACAAACAACAATAAAGAACAAGATCGTTTTCTCCCTATAGCCAATGTGGGTAGAATCATGAAAAAAGTGATCCCTGCCAATGGGAAAATATCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGTTTTGTCACTGGGGAAGCATCTGACAAATGTCAAAGAGAAAAGAGAAAGACCATCAATGGGGATGATATCATATGGGCCGTCACAACTTTAGGCTTTGAGGATTATGTGGAACCATTAAAATCTTATCTTCAGAAATATAGAGACATAGAAGGAGAGAAGCTTAATATTCCAAAGCAACAACGTTCTGAACAAAGGCTACATCAACATCAACATCACCACCATAACCAAGAAGAAAGTAATCAACAATTCAACAATGCATATACCTCAACAAATCTCATATCTCAGCCTCCTTACGTGACCACAGATCAGCCATTTCCATTACCCTTCTCCCCAAATTCAATTCAAAAACAGTTACGGCCTCAAGATCAGGTTGATTCAGTGGGGCATTGGTATGAGTAA 633 0.3918 MEDESHNNSLPNGFTTGSPESPCLKTSTNTTTNNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAVTTLGFEDYVEPLKSYLQKYRDIEGEKLNIPKQQRSEQRLHQHQHHHHNQEESNQQFNNAYTSTNLISQPPYVTTDQPFPLPFSPNSIQKQLRPQDQVDSVGHWYE* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00767 210 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops2g00767 210 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Rops2g00767 210 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Rops2g00767 210 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Rops2g00767 210 MobiDBLite consensus disorder prediction 137 156 - -
Rops2g00767 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
Rops2g00767 210 MobiDBLite consensus disorder prediction 7 36 - -
Rops2g00767 210 Gene3D Histone, subunit A 28 168 IPR009072 GO:0046982
Rops2g00767 210 MobiDBLite consensus disorder prediction 137 158 - -
Rops2g00767 210 MobiDBLite consensus disorder prediction 1 36 - -
Rops2g00767 210 MobiDBLite consensus disorder prediction 170 200 - -
Rops2g00767 210 FunFam Nuclear transcription factor Y subunit B-3 30 157 - -
Rops2g00767 210 MobiDBLite consensus disorder prediction 170 210 - -
Rops2g00767 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops2g00767 210 SUPERFAMILY Histone-fold 38 146 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00767 Rops-Chr2 10881740 10882372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00767 13 208 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.878 2.76e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops2g00767 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00767 K08065 - gmx:100778216 342.813