Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00763 ATGGCGAACAAGAGCGGAAAGAAACCAGTGAGTCTCAACGACAGTCACTATCGCTTCCTCCAAGACCTCTCTGCTCCTCCCAAACCCTCCTCTTCCAACAACTCCTTCACTGATGAACACGATAACCCGATTCAACGCCGAAGCAAGACCCAACAAAAAGACGAAACTATCCCCCAGTTTTCTGCAATCACTGACTTCGATTCTCCAATCGGGCAAAACTCGGAGGAGAAACAAAAACCAATCAAGGAAGAAGAAGCAAAGGAAAATCCCCAGTTTTCTGCTAAGGAGGAGAACAAGACGAAGGTGAAAGTGCTTGGACGACGCCGTCTCTGCAAGTTTGCGGATTCAGGCGCCGCCAAGAATGTGGCTGTTGATGAGTCCAAGTTTGATGAACTCATCGACCTTGATTCGCCCATTCCGGCATCGAAAAATGTCATCCAGATAGAGGAGAGTGGGGGTAGGAGTGAAATTAGGGATATTTTGAATGAACTTAGCTCCAAGTTTGAGTTGTTATCAGTTGAGAGGAAACGGGTGCAGAAGCCTGTTGTTGAGGGTTCTGTTGGAGGGAAAGAAGCTTGTGATGATGAGGGTTTAGAGTTTGGGAGTGCTGGGTCTTCATTTTCTCCACAACAGGATCCATGTGACAGTACTAAGAATGATGGTGTTGGTCTCGAGTATGATTCGGAAGATTCTGTTCAAGAGTTGGATAATTTCGAGCCTGAAAATGATGGTTCGATAACTCTGAATGGCCCAAGATCTACATTTAAGTTGCCGGGTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGATGGATTGAAGTGGCTCTGGTCGTTGCATTGTATGGGTAAAGGTGGGATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGCAATGGTTGTGGCCCCAAAAACCCTATTGCCCCATTGGATCAAGGAATTGTCAGTTGTCGGTCTCTCAGAGAAGACAAGAGAATATTTTGGAACTTCCACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACAACATATGATATTGTACGCAACAATTCTAAGTCCTTACGGGGACATAATTATTATGATGAGGATAGTGAAGATAGCACTACATGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTGAGTGACAAAAAATGGTTCAAAGACAATTTTGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTATGACAGAGAGAAGCGTATTGGTTCATCTGTAGCAAAGGATCTTAGAGATCGTATTCAGCCTTACTTCTTGAGGCGTTTAAAGAGTGAGGTTTTCAATCAAGATGAAGACAAAACAACTGCAACACTTTCTCAGAAACAAGAGATCATCGTGTGGCTTCGATTGACTGGTATTCAGCGGCATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCCGCATTTGATGGATCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCAGAAAATTTGGCAATGCACATAGCAGATGTTGCAGAAACTGATAAGTTTAAAGATGAGCATGATGTATCGTGCAAAATTTCATTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAATGTGCTTATCTTTTCTCAGACTCGTAAGATGCTTAATTTTATCCAGGAATGTCTATCATCCAAAGGTTATGATTTCTTACGAATTGATGGCACAACAAAAGCCTGTGACAGATTAAAGATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTGATTGTAGTTGACCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCATATCGTATTGGTCAAAAGAAGGATGTCCTTGTGTATAGACTGATGACGTGTGGAACTGTTGAAGAAAAGATTTACAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACAGCTACTGAACATAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTGAGGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGGAGCATGATCGTCAACATACACTGGATGACTCTTTCAAAGCACATATAGAGTTCCTGAAAAGTCAGGGCATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCCAAGACAGAACCAGTTCAAGCTGCTCCTGAGGATGATGAAGTAGCAAGGAATCATAGGACTAAATATATTGGAACTTCAACATCATCTTCTTCACAGGAGCATATTGCTGATGGAGCTGAGTTTGCTTTTAATCCCAAGGATGTTAATTTAAGCAAAAAAGGTTCTTCTCCAAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAGAATTAATCGGCTCTCTCAAACACTGTCAAATACGGCGATGATTTCTAAATTACCTGACAAGGGGGAGAAACTACAGCAACGAATGGCGGAGCTGAATTTAGAGCTCGCTAAACTGAGGATGGAACAAAGGAACGCATCTGATTTGGATGATTTTACTAGTGAATTTCAGAGAGTGTTGAATGTATAG 2916 0.4232 MANKSGKKPVSLNDSHYRFLQDLSAPPKPSSSNNSFTDEHDNPIQRRSKTQQKDETIPQFSAITDFDSPIGQNSEEKQKPIKEEEAKENPQFSAKEENKTKVKVLGRRRLCKFADSGAAKNVAVDESKFDELIDLDSPIPASKNVIQIEESGGRSEIRDILNELSSKFELLSVERKRVQKPVVEGSVGGKEACDDEGLEFGSAGSSFSPQQDPCDSTKNDGVGLEYDSEDSVQELDNFEPENDGSITLNGPRSTFKLPGKIAKMLYPHQRDGLKWLWSLHCMGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRAMVVAPKTLLPHWIKELSVVGLSEKTREYFGTSTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGHNYYDEDSEDSTTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLSDKKWFKDNFETPILRGNDKNAYDREKRIGSSVAKDLRDRIQPYFLRRLKSEVFNQDEDKTTATLSQKQEIIVWLRLTGIQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAENLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNFIQECLSSKGYDFLRIDGTTKACDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEHKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDRQHTLDDSFKAHIEFLKSQGIAGVSHHSLLFSKTEPVQAAPEDDEVARNHRTKYIGTSTSSSSQEHIADGAEFAFNPKDVNLSKKGSSPSSAGKLTESEIKDRINRLSQTLSNTAMISKLPDKGEKLQQRMAELNLELAKLRMEQRNASDLDDFTSEFQRVLNV* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00763 971 Gene3D - 523 821 IPR027417 -
Rops2g00763 971 Pfam Helicase conserved C-terminal domain 621 733 IPR001650 -
Rops2g00763 971 Pfam SNF2-related domain 268 571 IPR000330 GO:0005524|GO:0140658
Rops2g00763 971 PANTHER SNF2/RAD54 FAMILY MEMBER 44 950 - -
Rops2g00763 971 MobiDBLite consensus disorder prediction 25 39 - -
Rops2g00763 971 SMART helicmild6 650 733 IPR001650 -
Rops2g00763 971 MobiDBLite consensus disorder prediction 54 75 - -
Rops2g00763 971 FunFam Protein CHROMATIN REMODELING 24 244 521 - -
Rops2g00763 971 Gene3D - 250 522 IPR038718 -
Rops2g00763 971 Coils Coil 931 958 - -
Rops2g00763 971 MobiDBLite consensus disorder prediction 76 100 - -
Rops2g00763 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 805 IPR027417 -
Rops2g00763 971 MobiDBLite consensus disorder prediction 1 100 - -
Rops2g00763 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 501 IPR027417 -
Rops2g00763 971 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 451 IPR014001 -
Rops2g00763 971 SMART ultradead3 260 459 IPR014001 -
Rops2g00763 971 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 624 783 IPR001650 -
Rops2g00763 971 CDD SF2_C_SNF 613 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00763 Rops-Chr2 10807513 10816222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00763 258 783 RAD5 or RAD16-like Gene Family AT3G16600 24.704 8.58e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops2g00763 SNF2_N 7.8e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00763 K20093 - gmx:100779283 1510.35