Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00750 ATGCAAGGTGCATTGGAGTTACCACCTGGGTTCCGATTTCACCCCACTGATGATGAGCTCGTTAATCACTACTTGTGTAGAAAGTGTGCTGCCCAGTCAATCGCTGTTCCTATTATCAAAGAAATCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAATGGTACTTTTTCTCTCCAAGGGACCGAAAATATCCGAACGGTTCACGACCGAACCGGGCGGCCGGAACCGGATACTGGAAGGCAACTGGAGCAGATAAACCGATTGGAAAGCCAAAGGCTCTTGGAATAAAGAAGGCACTTGTGTTCTACGCAGGCAAAGCCCCTAAAGGAGTTAAGACAAATTGGATCATGCATGAGTATCGCCTTGCCAACGTTGATAGATCAGCCTCCAAGAAAAACAACAACAACCTAAGGCTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATGGAGAAATACAACGGTGTTGATCAGAAAGCATCAAAGGTTTCAGAGGAAGTTCAGTTTCACGAGAACGAGATCAAGCCTGAGATCAAGATGTACGGCCAGGATGTTGATTTCAGGAACGACCAATTGTACATGGACACGTCGGATTCGGTTCCCAGGTTGCACACGGACTCCAGCTGCTCCGAGCACGTGGTTTCACCTGATGTCACGTGCGACAAGGAGGTGCAAAGTGAGCCCAAGTGGAATGACCTTGAGCCAGGCTTAGACCCAGTTTCAGCCTTTGATTTTCTCATGGACAATAATAATAACATGAACATGTCAGAGGTAGATGACCCTTTTGCCCCTCAAGGCCAGTACCAAATGAACCAGTTCTCAAATTGGCAGGATGTGTTCATGTACCTACCCAAGTCATTTTGA 903 0.464 MQGALELPPGFRFHPTDDELVNHYLCRKCAAQSIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKMEKYNGVDQKASKVSEEVQFHENEIKPEIKMYGQDVDFRNDQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCDKEVQSEPKWNDLEPGLDPVSAFDFLMDNNNNMNMSEVDDPFAPQGQYQMNQFSNWQDVFMYLPKSF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00750 300 Gene3D NAC domain 16 165 IPR036093 GO:0003677|GO:0006355
Rops2g00750 300 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Rops2g00750 300 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Rops2g00750 300 ProSiteProfiles NAC domain profile. 7 159 IPR003441 GO:0003677|GO:0006355
Rops2g00750 300 PANTHER NAC TRANSCRIPTION FACTOR 56 7 212 - -
Rops2g00750 300 FunFam NAC transcription factor 16 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00750 Rops-Chr2 10661122 10663167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00750 1 291 NAC Transcription Factor Family AT5G08790 63.176 5.92e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g00750 NAM 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00750 - - gmx:100170751 504.212