Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00747 ATGTCTGTTCTTTCCCAAGCCACTGCAAACAGTAACTTTGATGGTAAAAGTTTTCACAAGTTTTTTGAGTGTTGGTTGGCTGAACAAAACCAACATCTCAATGACCTTTCAGAAGCTGAATCAACTCAGCTTTCAAGGGAACAAGTTCAGGTACTGATAGATAAGGTGGTGGGGCATTATGAGTATTACTACAAGGCTAAGTCAAGATGGGCAAAATATGATGTGCTTGCCATGTTGTCCCCAACATGGAGAAGCTCCTTGGAGGAGGCTTTTCTTTGGATTGGTGGGTGGAGACCAAGCATGGCATTTCACTTGCTATATTCCAAATGTAGTTTGCAATTTGAGGCCAGGTTGAATGAACTTATTCAAGGGATAAGAACATGTGACCTGGGAGATCTCTCAGCTGCTCAACTTGCTCAGTTTGATGATATGCAAAGGAGGACCATCAAAGAGGAGAGGGAGATCACTGATATGATGGCAAAGCACCAGGAAACAGTGGCTGATGCTCCAATGGTGGAGTTATCTCATGTGATTTCTGAGATGATCAGAGCCAATGAAACAGGAAAGAGTGAGAATAAGGAAATAGAAGACAAAATTGTGTCAACTCTGGAACCAAAGGTGGAAGGTCTGGAGAAGATCCTTCATGAAGCTGATGATCTAAGGCTAAGAACACTGCAGGGCATTGTTAATGTTCTGACTCCACAGCAGGCTATCCATTTCTTAATTGCTGCTGCAGAGCTGCACCTGAGGCTACATGAGTGGGGCAAGAAGAATGATGCCAGGAAGTGCAATCAAGTTTGGTCTCTTCTTGATGGCAGAACTGATCAGATGGGAAAAGAAAATATGTCAGCAATGACAAAGGAAGAGGTCAGTGATGATGGTTCCTCCAGTGTTGAAACTGGGGATTTAGAATCTCACTCTCGGCCTAGTCTGGAGAAGGATACAGGCTTGGCAAGTTGTCGTGTGTGCCAGTGTGCTGAATCTGATAAAAGGGGAGATGCTGCACTGGAATTTTTGGGCATCACTCCAGTTATAGAAAGCAAGGGGGAAGAGGTAAGGTCTGATGGCAAGGGAATTTCAAAAAATATGTCTCTTAACAGAAATTTTGGAAGCAAATCTGGGATGGTGGAATTTGTAAGCCCTGACGGCGAGGTTTTCATTTGTAAAAATGATTTGGAAATGGGTTTGTCTCATCAAGATACATTAGTTGAACTTGGTTGTTGCTGTAAAAATGACCTTGCTTTAGTACATTATGCTTGTGCGCTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGCGGACATATAGCAAATAATATCAGAGTGTCTGACTTCAATAAGGTTGTTGGTTCTTTGAAGGAGTATGAAGCATTGAGGGAAAGAACTGCTAGTGGGGATCCTGGTCCTGCACAACTTCATGCAAATACTGGTGTTGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGACTAAGTGAAATTACTCTATGGTTTTGTCCTCATAATAGCAGCAACATTAACAACAATAGCAATGTGGACACAGTTTCACAGGTTGTTTCTGAGCAGCCTTTGAATATTGTTGCTGAAGATGCTGGCCCTGAACATAGTCCTGCAACTAAGTGGGCTGTAGAAGGTACAGGAATCCTGCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCAAGAAGTGGTCTTCATATCCTACTTGGAGGTATTTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATTTGGGCTTCACGGACGCACGGTGCCCATAAAACGTGA 1908 0.4334 MSVLSQATANSNFDGKSFHKFFECWLAEQNQHLNDLSEAESTQLSREQVQVLIDKVVGHYEYYYKAKSRWAKYDVLAMLSPTWRSSLEEAFLWIGGWRPSMAFHLLYSKCSLQFEARLNELIQGIRTCDLGDLSAAQLAQFDDMQRRTIKEEREITDMMAKHQETVADAPMVELSHVISEMIRANETGKSENKEIEDKIVSTLEPKVEGLEKILHEADDLRLRTLQGIVNVLTPQQAIHFLIAAAELHLRLHEWGKKNDARKCNQVWSLLDGRTDQMGKENMSAMTKEEVSDDGSSSVETGDLESHSRPSLEKDTGLASCRVCQCAESDKRGDAALEFLGITPVIESKGEEVRSDGKGISKNMSLNRNFGSKSGMVEFVSPDGEVFICKNDLEMGLSHQDTLVELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGSLKEYEALRERTASGDPGPAQLHANTGVDPDAVAAIRRQRLSEITLWFCPHNSSNINNNSNVDTVSQVVSEQPLNIVAEDAGPEHSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHKT* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00747 635 MobiDBLite consensus disorder prediction 288 304 - -
Rops2g00747 635 Pfam Seed dormancy control 32 108 IPR025422 GO:0006351|GO:0043565
Rops2g00747 635 ProSiteProfiles DOG1 domain profile. 15 261 IPR025422 GO:0006351|GO:0043565
Rops2g00747 635 SMART ringv_2 387 437 IPR011016 GO:0008270
Rops2g00747 635 ProSiteProfiles Zinc finger RING-CH-type profile. 377 443 IPR011016 GO:0008270
Rops2g00747 635 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 17 265 - -
Rops2g00747 635 SUPERFAMILY RING/U-box 402 439 - -
Rops2g00747 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 439 IPR013083 -
Rops2g00747 635 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00747 Rops-Chr2 10619859 10628144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00747 277 625 C3H Transcription Factor Family AT5G08750 66.480 6.77e-156 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00747 - - gmx:100805323 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00747 2 10619859 10628144 Rops2g00747 2 10619859 10628144 ECH