Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00716 ATGCCTCTTTTTAGGAGAAAGCCTTTTGCCTTGGCTGAACCTCCTCAGGATTTGAAGCCAGATGAGCATGTTTACCAAATTCGATTCACAAAAGAAATATTTCGAGATTATCATGATTATTTGAACCGTTTGAATCTATACCGCCAGAGAGTTTGGACGTGTAAGGTCACCGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAACGAGCCACTGAGAAAGTCCAACAAATTCCTAAAGCATTAGTGACTCCTGCTTTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAGTTGCAGGAATGTTTGTTTGTAGGTGCCGAACTGTATGGGAAAAAGGATGATGGAGTATGTCCATGCAAAATATTAGAAGTCATCCAGGAAGGAGTTGACAAATTATGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGTGAAAAAGCAGTTGTTGGTGCGGAAGATTTGGTGCAAAGGAAGCCACTTTTTAGTAGAAATATGTTGAAGTCTTTTATTCGGGAATCTACGCATCGAAATGCCCCTTGGGTTTTACATGATGAACTGGCACAAAGTCATGGAATCTCAACTGACATTCCTGAGGAGTTAAGAGGAAGAGTTTTTTTCAAAGATGGACTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCAATGGAAGAAACTGACAATTGTAAAAGGAAGAAGTCGGATGGGACACTAGTCAATGGTTCTGCCCAGGAAGAAAATGTCCAACACAAGGATAAACCAATCAAATATCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGATGATCCTGCTTTCACTGATCGTCCTTCTCCATCGAGGGACTTTAATGTTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAAACCGTTGCACTTGTGGCCCTATTCTCTAGAAGATTTTGAAAATGCAATCTGCCATAGGGATAGCAATGTAGTTCTCCTGGTGGAATCTCATGCTGCACTTTTCCGGGTTCTCATCAAAGATGATGGTGAATACTCTTCAGCTGTAAAGAAACGAAAGTTGAAAAAGATTACAATGATCAATTGGACAGAATATTTATGTGATTTTCTAGAAATGATCAATATTCCCAGACTACGGCACTATGAAGCAACCATAAAACGGGGACACTATGGCCTTGTAGATGCCAATGCTAAATTAGAAATCTTATATGAATTGGTCAATCGAGCCCTGGAAACTGCAATTTTCCGGGGAAAGTTGGATGAGTTTATTGAACAGCGGCAGGTACTTGGGGCCTCTAGGAGGGAAGAAGCACTGGAAGATGGTAGGATGAGAAGAGAACAAAAGGAGCGGTTGAAAACTGAGTCAGAAAGCAATGGAATTGTTGACGGGCATCATCTGAACAGTGCAAATGTCTTAACAAACAATAATCACCTCATACAAAATGGAGACATGGGAAACAAAAAAAATGGAGAGATAGAATCATCTGTGCAAAACAATCCATTGGGTAGAAGTGGGATCAAGCATTCAAATCATGCTTCAAAAAAATCACCCAAGAAGCTAAATTCAGAGCTTAAAGAACCAGTAGAAAATGGAAAAGAATTATCCAAAAAGGAATCACCGAAACAGTCGAAGGGTGATAAGGATCCATCAAAGAAGATTAATAAAGAACAGAGGAAAGAATATTTTGAACGGGAGATGGAGAAACGAATTATTCGTAGAAGCCCATTAGGTAAGGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGGAGTGGGGACACTACAGCAGCAAGGAAGAGCTTGACGCATTGATGGGTTCACTTAATTGCAAGGGTGAGCGGGAAAGGGCACTGCATAAACAACTGGAAAAATATTATGGTAGTATATGCTCAGAACTCCAGAAAAGATCGAAGGATTTGATGCTCAATATTGCGAATGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTCGAGCTCCACCAAGGCAAAATCCTGCCAATGCTTTCCTCAGATATGTTAACAAGTGGAAAGAAGAGTAG 2133 0.4023 MPLFRRKPFALAEPPQDLKPDEHVYQIRFTKEIFRDYHDYLNRLNLYRQRVWTCKVTGKTGLTYEEALVSEQRATEKVQQIPKALVTPALRIIQYSMLPLKDLADSIAEKLQECLFVGAELYGKKDDGVCPCKILEVIQEGVDKLCYEVAWLDKNKNISEKAVVGAEDLVQRKPLFSRNMLKSFIRESTHRNAPWVLHDELAQSHGISTDIPEELRGRVFFKDGLLICSKKRKNEESMEETDNCKRKKSDGTLVNGSAQEENVQHKDKPIKYPIDDLLVKPSPDDPAFTDRPSPSRDFNVPMSCVGDLLMVWDFCTSFGKPLHLWPYSLEDFENAICHRDSNVVLLVESHAALFRVLIKDDGEYSSAVKKRKLKKITMINWTEYLCDFLEMINIPRLRHYEATIKRGHYGLVDANAKLEILYELVNRALETAIFRGKLDEFIEQRQVLGASRREEALEDGRMRREQKERLKTESESNGIVDGHHLNSANVLTNNNHLIQNGDMGNKKNGEIESSVQNNPLGRSGIKHSNHASKKSPKKLNSELKEPVENGKELSKKESPKQSKGDKDPSKKINKEQRKEYFEREMEKRIIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGHYSSKEELDALMGSLNCKGERERALHKQLEKYYGSICSELQKRSKDLMLNIANDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00716 710 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Rops2g00716 710 Pfam DDT domain 303 360 IPR018501 -
Rops2g00716 710 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 708 - -
Rops2g00716 710 MobiDBLite consensus disorder prediction 452 483 - -
Rops2g00716 710 MobiDBLite consensus disorder prediction 452 478 - -
Rops2g00716 710 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 590 656 IPR028941 -
Rops2g00716 710 MobiDBLite consensus disorder prediction 535 579 - -
Rops2g00716 710 MobiDBLite consensus disorder prediction 237 266 - -
Rops2g00716 710 SMART testlast3 302 363 IPR018501 -
Rops2g00716 710 MobiDBLite consensus disorder prediction 495 525 - -
Rops2g00716 710 MobiDBLite consensus disorder prediction 495 579 - -
Rops2g00716 710 ProSiteProfiles DDT domain profile. 302 363 IPR018501 -
Rops2g00716 710 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00716 574 666 Homeobox Transcription Factor Family AT5G44180 40.196 2.46e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Rops2g00716 WAC_Acf1_DNA_bd 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00716 - - gmx:100789956 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00716 2 10095623 10102423 Rops2g00716 2 10095623 10102423 ECH