Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00709 ATGGGTAGAACTCCTTGTTGCGACAAAGAGCACACCAACAAAGGTACTTGGTCTAGAGAGGAAGATGAGCGCCTTGTGAACTACATCAAGGCATATGGGGAAGGTAATTGGAGATCTATTCCCAAAGCAGCAGGCTTGCAACGATGTGGAAAGAGTTGCAGGTTTAGATGGACAAATTATCTGAGACCTGGTTTGAAGAAAGGAAACTTTACTGAAGAGGAAGATGAGCTCATCATCAACCTCCACAGCACACTAGGGAACAAATGGTCTCAGATAGCTTCCAGGTTACCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACCTATATGAAGCGTAAACTGTACAACCGTGGAATTGACCCAAAAACCCATCAACCACTCGATGAGGCAACAACTTCCTCCTCGACCACCATTGCAACTCCACCGACTAACAACAGAACTAACAACGCCAGTAGGAGCAACCACAACAACATGATGAACTACAACACCGATTATCAATTATTTGGTGCCTCTGCCAGCAACATTAACACCAGCATTGATTATCGGTTATTTGGTGTCGATGTCAATTCTAGGATCATTAGAACTGACTCATCAGTTGGTGAGGCATCAAACATTAGTAGTGGGGTTACCATAGAGGGAGCCCATCCTCAAGAACTCAACTTAGAACTTACCTTGGGCCCACCATCTCAACCCCAAGTCTCTTTGATGTTCCTTCGCAAGTTGAAACAACAAGATATGTACCCGTGGCTTGCGAACGTTAACACCGAAGATGTGTGCCTGTGTTATGGGCTAGGGTTACAAGTTAACCATGTCTGTAACTGCAAGGCCATGTTTTCTGGTGCTACTATTGCGGTTAATCCATCTGGCTCCGACAATGATGTGTATAGATCTTAA 900 0.4444 MGRTPCCDKEHTNKGTWSREEDERLVNYIKAYGEGNWRSIPKAAGLQRCGKSCRFRWTNYLRPGLKKGNFTEEEDELIINLHSTLGNKWSQIASRLPGRTDNEIKNYWNTYMKRKLYNRGIDPKTHQPLDEATTSSSTTIATPPTNNRTNNASRSNHNNMMNYNTDYQLFGASASNINTSIDYRLFGVDVNSRIIRTDSSVGEASNISSGVTIEGAHPQELNLELTLGPPSQPQVSLMFLRKLKQQDMYPWLANVNTEDVCLCYGLGLQVNHVCNCKAMFSGATIAVNPSGSDNDVYRS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00709 299 FunFam MYB transcription factor 68 129 - -
Rops2g00709 299 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g00709 299 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g00709 299 CDD SANT 69 112 IPR001005 -
Rops2g00709 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g00709 299 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops2g00709 299 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g00709 299 PANTHER F14D16.11-RELATED 1 166 - -
Rops2g00709 299 CDD SANT 16 61 IPR001005 -
Rops2g00709 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g00709 299 SMART sant 66 114 IPR001005 -
Rops2g00709 299 SMART sant 13 63 IPR001005 -
Rops2g00709 299 MobiDBLite consensus disorder prediction 124 156 - -
Rops2g00709 299 MobiDBLite consensus disorder prediction 128 156 - -
Rops2g00709 299 Gene3D - 14 66 - -
Rops2g00709 299 Gene3D - 69 116 - -
Rops2g00709 299 FunFam MYB-related transcription factor 13 66 - -
Rops2g00709 299 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00709 Rops-Chr2 9997738 9998991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00709 1 150 MYB Transcription Factor Family AT4G38620 72.368 7.72e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g00709 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00709 K09422 - gmx:100808083 312.383