Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00708 ATGTCTATTGAAAATGACCCTAATGGTGCCATCATGGGGCTCCTCCAAGTTAAGGAGAAGAATGATATCTATGGTCCTGATATTCCCCTTTTACGCTTCTATGTCAAGCACGAGACTGAGACTCGTTTGAGGGTACACATCACTGATGCAAAGAAACAAAGGTGGGAGCTTGTTTTCAGTTATACTTCAGACCCGTTTAACTTTTCAGTGAAAAAGAAGTCCAATGGAGATACCCTTTTAGATTCCAGCTCTGCTGAGTCAGACCCATTTGGTCCATTGGTCTTTAAGGACCATCAGTCAGCTCCAAATTTCCTTAGTAAAACAGAAAATTTAGCAACAAGCATACGCCATGGTCTTGAAATTATTGATAGTCACCATCGTAATGCAACTTTGAGGCAGTCATTATATAGGTTTTCATTACGACCAAGAGAATCTAGACTAAATTTTCCTACTGTCAAAGTTGGTGTCGGTGTGCAGACTTTTCTTGATGATAATGTCGACGAAGGTTCTGTTTTGTTCACCTGCAGTAATTGTAAAAGCAGAGCGCAGCTTGATGTCAATGAGATTGACAATAACTCAAACCTACAGTTGGTACCTTTTGATTGCCCTGAGTCTGCTGATAAGCCAAAGAAGCAAGTTCTCAAAGCAGTGGAGAAGGTTTTGGCAGGATCGATAAGGAGAGAAATGGCACTTGAAGAGTTCTGTATAAAGCAGACTTCCGAGATATTGCATCTTAATCGCTTGGTGCAACAGTATAAGCATGAGAGGGAATGCAATGCCATAATTGCACAGACAAGGGAAGATAAAATTCTTCGCCTTGAAAGGCTTATGGATGGTGTTTTACCCACTGATGAGTTCATGGATGAAGAACTGGTGGCCCTTACCCATGAACACAAGCTTTTAAAAGAGAAGTACGAGAATCATCCAAAAGTTTTGAAGATGGAGATAGAGTTAAAAAGAGTACAAGATGAACTAGAAAACAAGGAAGCAATATCCTTTATTGCAATTGACTTATTCAGAAGAACCCGGTTTGGCGGCAACTCTCACTTTGCCATTCCAGAGTCAACAGAGGAGAGGGATGATACACATGGAATTCCAGCATCAATTGAGGACAGTGCTGAAGAAGCGAGTGTTATCCCCTTTTACAATGCCAAACCTGAGCAGGTGGATAAAGCTTTGAAGCATGTTTACCATGTTTCAATGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGCTCTCTCTATGGTGATCTCAGGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTCAAGATCACTAAACAGTACTTGGCTAATGTATCTCTGAAGATCAATGTGAAGATGGGAGGTAGAAACACAGTTCTTGTTGATGCCGTAAGCTACAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAATGAAGAGGACTCCAGCCCTTCGATAGCAGTTGTAGTAGCATCCCAAGACTGGCCTGAAGTGACGAAATATGCCGGTACAGTGTGTGCTCAAGCATATATACAGGAGCTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCCTTTAGAAAAGCAACAGGACAGGAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTATACTTTATGAGTTGCATAAAATGATTGTCAAGATTGATTTTTTTCATGCTTTTGATCTGCTTTCAGGGACTGTTGTTGATTCCAAAATCTGTCACCCAACAGAGTTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGCAATTTGATGCTTGTGGGAATATGTTGCAACAACTGAGTACTAAGCTTTCAGTTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGTACCAACACATGGGACAGATTTGA 2034 0.4071 MSIENDPNGAIMGLLQVKEKNDIYGPDIPLLRFYVKHETETRLRVHITDAKKQRWELVFSYTSDPFNFSVKKKSNGDTLLDSSSAESDPFGPLVFKDHQSAPNFLSKTENLATSIRHGLEIIDSHHRNATLRQSLYRFSLRPRESRLNFPTVKVGVGVQTFLDDNVDEGSVLFTCSNCKSRAQLDVNEIDNNSNLQLVPFDCPESADKPKKQVLKAVEKVLAGSIRREMALEEFCIKQTSEILHLNRLVQQYKHERECNAIIAQTREDKILRLERLMDGVLPTDEFMDEELVALTHEHKLLKEKYENHPKVLKMEIELKRVQDELENKEAISFIAIDLFRRTRFGGNSHFAIPESTEERDDTHGIPASIEDSAEEASVIPFYNAKPEQVDKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLRRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSYRIPLVSDIPTIIFGADVTHPENEEDSSPSIAVVVASQDWPEVTKYAGTVCAQAYIQELIQDLYKTWHDPVRGLVSGGMIRDLLVSFRKATGQEPLRIIFYRDGVSEGQFYQVILYELHKMIVKIDFFHAFDLLSGTVVDSKICHPTEFDFYLCSHAGIQQFDACGNMLQQLSTKLSVSSYGEDELMSLIQTYQHMGQI* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00708 677 SUPERFAMILY Galactose mutarotase-like 3 98 IPR011013 GO:0003824|GO:0005975|GO:0030246
Rops2g00708 677 Pfam Piwi domain 412 602 IPR003165 GO:0003676
Rops2g00708 677 Gene3D - 362 478 - -
Rops2g00708 677 Gene3D - 609 644 IPR036397 GO:0003676
Rops2g00708 677 Pfam N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase 15 57 IPR031727 -
Rops2g00708 677 Gene3D glycosyl hydrolase (family 31) 2 101 - -
Rops2g00708 677 ProSiteProfiles Piwi domain profile. 411 599 IPR003165 GO:0003676
Rops2g00708 677 SMART Piwi_a_2 411 673 IPR003165 GO:0003676
Rops2g00708 677 SUPERFAMILY Ribonuclease H-like 401 639 IPR012337 -
Rops2g00708 677 Coils Coil 311 331 - -
Rops2g00708 677 Gene3D - 480 608 IPR036397 GO:0003676
Rops2g00708 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 387 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00708 Rops-Chr2 9949265 9954466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00708 378 638 Eukaryotic Initiation Factors Gene Family AT5G43810 76.531 1.30e-149 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00708 K11593 - gmx:100819073 447.588