Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00706 ATGGGTAGAACTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGTGCTTGGTCTCGAGAGGAAGATGAACGCCTTGTCAACTACATCAAGGCCCACGGGGAAGGTTCTTGGAGATCTTTTCCCAAAGCAGCAGGTTTGCTTCGATGTGGAAAGAGTTGGAGGTTCAGATGGATAAATTATCTGAGACCTCATTTGAATAGAGGAAACTTCACTAAAGAGGAAGATGAGCTCATCATCAACCTCCACAGCACGCTTGGGAACAAATGGTCTCAGATAGCTTCTAAGTTACCTGGAAGGACAGACAATGAGATCAAGAATTATTGGAACACCCACATAAAGAGGAAACTATACAACCATGGGATCGACCCAAAAACCCATCAACCACTAGACAGGGCCTCGAGTTCCTCCTCAGTCCCCACAACAACTCCATCAGCTAATATAACAATGGTTATGGTCACTGAAAGTAACATGAGAACTCACAACAACAATGTCAGTATCAGCAACTACAATAACTTCACTGATTTTCAATTATTTGGTGCTTATGTCAGCAACATTAACACCAACACTGATTATCAGTCATTTGGTGCTAGTACCAGTTCCATGATCCTTGGAACTAACTTGTCAGCTTGTGAAGAATCAAATGGTAGCAGTGGGGTTACCACAAAGGAAGCCTACCCTCAAGGACTCAACTTGGAACTTACATTGAGCCCACCCTCTCAACCCCAAGTCTTCATGTTCACTTGCAAGTTGAAACCACAAGATATGTACTCGTGGCTTGCGAATGTTAATACCGAAGACATGTGCCTGTGTTACGGGCTAGGTTTACAAGTTAACCACGTTTGTAACTGCAAGGCCATGTTTTCTGGTGTTGCTACTGGTGTTACTCCACCTGGCTCGGACAACGACGTGTATAGATCTTTGGGACCAAGAATATGA 936 0.438 MGRTPCCEKEHTNKGAWSREEDERLVNYIKAHGEGSWRSFPKAAGLLRCGKSWRFRWINYLRPHLNRGNFTKEEDELIINLHSTLGNKWSQIASKLPGRTDNEIKNYWNTHIKRKLYNHGIDPKTHQPLDRASSSSSVPTTTPSANITMVMVTESNMRTHNNNVSISNYNNFTDFQLFGAYVSNINTNTDYQSFGASTSSMILGTNLSACEESNGSSGVTTKEAYPQGLNLELTLSPPSQPQVFMFTCKLKPQDMYSWLANVNTEDMCLCYGLGLQVNHVCNCKAMFSGVATGVTPPGSDNDVYRSLGPRI* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00706 311 Gene3D - 69 116 - -
Rops2g00706 311 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Rops2g00706 311 CDD SANT 69 112 IPR001005 -
Rops2g00706 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g00706 311 MobiDBLite consensus disorder prediction 128 143 - -
Rops2g00706 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g00706 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g00706 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g00706 311 SMART sant 66 114 IPR001005 -
Rops2g00706 311 SMART sant 13 63 IPR001005 -
Rops2g00706 311 FunFam MYB transcription factor 68 129 - -
Rops2g00706 311 Gene3D - 14 66 - -
Rops2g00706 311 MobiDBLite consensus disorder prediction 121 143 - -
Rops2g00706 311 FunFam MYB-related transcription factor 13 66 - -
Rops2g00706 311 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops2g00706 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g00706 311 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00706 Rops-Chr2 9930334 9931630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00706 1 150 MYB Transcription Factor Family AT4G38620 71.154 4.47e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g00706 Myb_DNA-binding 2.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00706 K09422 - gmx:100808083 329.331