Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00704 ATGGGTAGAACACCTTGTTGTGAGAAAGAGCACACAAACAAAGGTGCTTGGTCTAGAGAAGAAGATGAACGCCTTGTCAACTACATCAAGGCTCACGGGGAAGGTTCTTGGAGATCCCTTCCCAAAGCAGCAGGTTTGCTTCGATGTGGCAAGAGCTGTAGACTTAGGTGGATAAACTACTTGAGACCTGATCTAAAAAGAGGAAACTTTACTGAAGATGAGGATGAGCTCATTATCAACTTCCACAGCAGGCTTGGGAACAAATGGTCTCAAATAGCTTCCAAGTTACCTGGAAGGACAGACAACGAGATCAAGAATCACTGGAATACCCATATCAAGCACAAACTCTATAACCGAGGAATCGATCCCAAAACTCATCAACCACTCGATAGGGCGTCAAATTCCTCCTCGGCCACCACCGCAACTGCACCAGCTAATACTACAGTGCCTGTGGTCACCAAGACCAACAAGAAAACCAACAGTAGCAGCAGTGCCAACAACCATAATAACATGAATTACAACACTGATTATCATTTATTTGGTGCCTCTGCCAGCAACATTAACACCAACACTGATTCTCGGTTATTTGGTGCCTATGTCAGCAACATTAACACCAACACTGATTATCAGTTATTTAGTGCCTATACAAATTCTCAGGTTTTTGGAACTGACTCATCTGGTGGTGAGGCATCAAATAGCGGCAGTGGGGTTACCATAGAGGAAGCCCATCCTCAAGAACTAAACTTGGAACTTACCTTGGGCTCACCCTCTCTATGTTCCCTCACAAGTTGA 792 0.4457 MGRTPCCEKEHTNKGAWSREEDERLVNYIKAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINFHSRLGNKWSQIASKLPGRTDNEIKNHWNTHIKHKLYNRGIDPKTHQPLDRASNSSSATTATAPANTTVPVVTKTNKKTNSSSSANNHNNMNYNTDYHLFGASASNINTNTDSRLFGAYVSNINTNTDYQLFSAYTNSQVFGTDSSGGEASNSGSGVTIEEAHPQELNLELTLGSPSLCSLTS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00704 263 Gene3D - 69 143 - -
Rops2g00704 263 CDD SANT 69 112 IPR001005 -
Rops2g00704 263 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Rops2g00704 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g00704 263 CDD SANT 16 61 IPR001005 -
Rops2g00704 263 FunFam MYB transcription factor 68 129 - -
Rops2g00704 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g00704 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g00704 263 Gene3D - 14 66 - -
Rops2g00704 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g00704 263 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops2g00704 263 FunFam Myb transcription factor 11 67 - -
Rops2g00704 263 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 185 - -
Rops2g00704 263 MobiDBLite consensus disorder prediction 128 145 - -
Rops2g00704 263 MobiDBLite consensus disorder prediction 122 145 - -
Rops2g00704 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g00704 263 SMART sant 13 63 IPR001005 -
Rops2g00704 263 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00704 Rops-Chr2 9909073 9910924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00704 1 147 MYB Transcription Factor Family AT4G38620 76.351 3.39e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g00704 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00704 K09422 - gmx:100808083 280.026