Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00676 ATGGATTCGGACACATTCACCTCCACCCTATTCAAGTGGGACCCACGAACCGTCCTTCCAACTGTACCGGTTACCCGGGTCCCGCTTATGGAGTACACGATGTCCACGACGGTGGCTGCGGCGGCACATACGGCGAGAACACCTAGGGAAATTCCGGGTGGGCTGGAGGAGCTGTTCCAAGCTTACGGCGTCAGATACTTCACGGCGGCTAAGGTGGCGGAGCTAGGGTTCACGGTGAGCACCCTGGTGGACATGAAGGACGAGGAGCTCGACGAAATGATGAACAGCCTGTCCCAGATTTTTCGCTGGGATCTCCTCGTTGGGGAGAGATACGGTATCAAAGCTGCCGTTAGAGCCGAGAGAAGACGCATTGACGGCCATGACATGAGGCGGCGCAACCTTCTCTCCACCGACACCACCACCAACGCACTTGATGCTCTCTCTCAAGAAGGGTTGTCGGAGGAACCGGTAGTGCAACAAGAAAAAGAGGTGGGAGGGAGTAGGGGACGGAGCACGTGGGAGTTAGTGACTGGAGCGGAGAGGAGGAAGCAGCAACAGAGGAGGAGGAGGAGAACGAGAATGAAGAGGAATCACCATCATGATGATTTTGATGAGAATGAAGACCCCGAAATGGAGGAAGGAGAAGATGATGACAATGGTGTTGGTGATGGGAGTTGTGAGAGGCAAAGAGAGCACCCATTCATTGTGACCGAGCCTGGTGAGGTTGCACGTGGCAAAAAGAACGGCCTCGATTATCTCTTCCATCTTTACGAACAATGCCGTGAGTTCTTGATCCAGGTTCAGAACATCGCCAAGGACCGTGGTGAAAAATGCCCCACCAAGGTGACAAACCAGGTGTTTAGGTACGCCAAGAAAGCAGGAGCGAGCTACATCAACAAGCCCAAAATGCGACACTACGTGCACTGTTACGCCTTACACTGTCTTGACGAGGAGGTATCGAACGAACTAAGAAGGGCTTTCAAGGAGAGAGGAGAGAACGTTGGGGCATGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATAGCAGGGCTTCAAGGTTGGGACATTGATGCCATCTTCAATGCACATCCTCGTCTTTCTATATGGTACGTTCCAACTAAGCTACGTCAGCTTTGTCACTCCGAGAGGAACAGCAACGCTGCTTCAAGCTCTGTCTCTGTTGGCAGCGGCCACCACCTTCCTTTCTAA 1209 0.5318 MDSDTFTSTLFKWDPRTVLPTVPVTRVPLMEYTMSTTVAAAAHTARTPREIPGGLEELFQAYGVRYFTAAKVAELGFTVSTLVDMKDEELDEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDGHDMRRRNLLSTDTTTNALDALSQEGLSEEPVVQQEKEVGGSRGRSTWELVTGAERRKQQQRRRRRTRMKRNHHHDDFDENEDPEMEEGEDDDNGVGDGSCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAGLQGWDIDAIFNAHPRLSIWYVPTKLRQLCHSERNSNAASSSVSVGSGHHLPF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00676 402 PANTHER PROTEIN LEAFY 1 402 IPR002910 GO:0003677|GO:0006355
Rops2g00676 402 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 222 387 IPR035209 GO:0003677
Rops2g00676 402 Gene3D Protein LEAFY 224 393 IPR038276 -
Rops2g00676 402 MobiDBLite consensus disorder prediction 206 220 - -
Rops2g00676 402 MobiDBLite consensus disorder prediction 148 227 - -
Rops2g00676 402 Pfam Floricaula / Leafy protein SAM domain 53 125 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00676 Rops-Chr2 9621008 9623387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00676 1 396 Orphan Transcription Factor Family AT5G61850 63.107 6.11e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Rops2g00676 C_LFY_FLO 3.7e-107 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00676 - - gsj:114416001 576.244