Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00674 ATGGAAGAAGCGCAAGAGAAAGAAGAGGAGAAACTGTTCCCGATTTACTCTACTCGTTCCCAGCAAGAATTGTCAGTTATGGTCTCTGCCCTTGTTCAAGTCATTGGTGGCACTCCAATGCATAAAGATTCAATAACAGCGTCTCAGTTCAGTGGTGCAGAGAATGAACAATCCCAAACACCGCAAGATCAAGGATGTGTGAACAAAGGAAACGTAAGAAGAGGCTATAGAGGAGTGAGGCACCGGCCATGGGGCAAGTGGGCCGCGGAGATTCGCGACCCAAAGAAGGCTGCAAGGGTTTGGCTTGGAACTTTTGACACTGCTGAGGCTGCTGCACTTGCTTATGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCTAAGCTTAATTTTCCAGAAAGGGTTCAAAGCATAGGAGAAGAATTTGGTTACCTCACAAATCGTCCACAATTCCAAGCAACGTCAAGAAGCAGTGGTGAAAATGAACAAGCACATACCCCAATTGCTCTTGCTACCCCTCCACACTTTTCGCTACAAACATATTCAAGTCCTTCTCAACAGAACAACTTCAATAATGTTGTGCCTCGTGTCTGTGTGGGTGACGTGTTTTCATCGTCATCTTCTGGACTATCTCATTCTCAACAACAACCTGAGCTTCTGACATCTTCGATGCAATTTGGAGGTTCTTCTTCTTCTGCTTCTGACCCACCTGGGAATTGGACAAGTGATTTGGATGGTAAACGTTGA 747 0.4552 MEEAQEKEEEKLFPIYSTRSQQELSVMVSALVQVIGGTPMHKDSITASQFSGAENEQSQTPQDQGCVNKGNVRRGYRGVRHRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQSIGEEFGYLTNRPQFQATSRSSGENEQAHTPIALATPPHFSLQTYSSPSQQNNFNNVVPRVCVGDVFSSSSSGLSHSQQQPELLTSSMQFGGSSSSASDPPGNWTSDLDGKR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00674 248 Gene3D AP2/ERF domain 75 134 IPR036955 GO:0003700|GO:0006355
Rops2g00674 248 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Rops2g00674 248 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Rops2g00674 248 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Rops2g00674 248 MobiDBLite consensus disorder prediction 51 71 - -
Rops2g00674 248 CDD AP2 76 133 IPR001471 GO:0003700|GO:0006355
Rops2g00674 248 MobiDBLite consensus disorder prediction 207 239 - -
Rops2g00674 248 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Rops2g00674 248 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
Rops2g00674 248 MobiDBLite consensus disorder prediction 51 67 - -
Rops2g00674 248 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Rops2g00674 248 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Rops2g00674 248 PANTHER DNA-BINDING DOMAIN 51 209 IPR044808 GO:0003700|GO:0009873
Rops2g00674 248 MobiDBLite consensus disorder prediction 207 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00674 Rops-Chr2 9588312 9591923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00674 12 155 AP2-EREBP Transcription Factor Family AT5G61890 58.442 3.03e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g00674 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00674 - - gmx:100793410 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00674 2 9588312 9591923 Rops2g00674 2 9588312 9591923 ECH
Rops2g00674 2 9588312 9591923 Rops10g00872 10 19733177 19734594 ECH
Rops2g00674 2 9588312 9591923 Rops8g02396 8 55482894 55484616 ECH
Rops2g00674 2 9588312 9591923 Rops10g00872 10 19733177 19734594 PCT