Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00670 ATGCCTTTTCAAATCATGGATCAGAGGGGCGTTTCTGCCTCCTCTCACTTTTTCGATGACATCTCCTTTCGTTCTGAGAGGAATGGTGGATTACAGAAGCCAAAATACATTAATGACCAATACCCACAAGGAAAGAATGGAATTATAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCTTGAAGTAAATTCAAAATCTGGCTTGTTGATGTCACAGACTAGTCTATCTGGAGGAAGTAGAGACAAGCTACATTTTGGTGGAGAAGGCATTGTTGATATGTTGAAGGATTCCAAGGAATCATCGCATTATCATCCCAAATCATGGTCTGATGCATGTATACAGTCAGCACCTACCTCATATGGTTTAATTGGGAACAAGATTGTCACCAATGCTGCCCCTCGTGAAAGTAGTCTATTCTCAAGCTCACTGTCTGAGATATTTAGCCAAAAGGTGAGGTTATTTGGGAATGATGTTCTGTCTGATCACTCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAGATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGATTTAGGATACAATTCTCATACCGGAACAAATGATGACTTGGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAACATTTAAGTTCAAGAAAAAGAACAAGTGGTCTGGATGGAGATTCTGGTTTCTTTATAGGTTCTAAAGGAAAACTTCCTTTTGGCGAACAGCCTTCAAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGATTTGTTATGATTTCTTATTATGACCTAAGAGCAGCACAACATGCAATGCAAGCGCTTCAAAATAGGCCATTGAGATCTAGGGAAATTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAACTTATACAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAAAATCCAGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGACATTGCTGGGAAGCAGATCAAGATTGAACCTGGCCATCCTAGTCTGATGCAGCAGTCTCATAAGGGGCAAGAGGAACGAGATGTTGGTCATAATATTATTGACAACTTATCATTAAGACAGAAGTCAACAGTGTCCTCTGGTGTAATTGGATCTGGCTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTGCAATGCGGCAACCTTTGAATGCATTCTTTCATGTGAATTCTAGCATTCACAACCCTATGAGAGGGGCATCTGCTGGAAAAGCATCTGGTGTTTTTGAGTCCAGTAACTTTGTCGATGCAATGAAATTTGCATCTAGTCCAAGACTTCATCCTCATTCCTTACCAGAGTATCATGGTCGTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGTACCATTAGCAACATGGCTGGCAATATAGGTACTGGAGTGGCAGAAGCCTCTGATGTCAGGCATATTCAAGGAATGAGCTCCACTGGGAACTTAGCAGAATTTAATGGAGGAGGAAATGGGATCCGCCCGCATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCATCAGCAACCTTCATCAAGTAACATGCTTTGGCAAAAAACACCATCATTTGTCAATGGTGCTTGCGCTCCGCGCCTTCCGCAGATGCCAAGCTTTGCTAGAAGCCCACCTCATATGCTGAGAACACCTCATGTGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTTGCCCTGGGAAAGGCAAAATTCTTACTTGGGAGAGTCCCCAGAGGCTTCTGGTTTTCACTTGGGTTCTCTGGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCACTGGATTTTCCTTCTCATAATATGCTTTCACAAGTTGGCGGGAATGGCACCGAACTGTCATCCAATGCTGGGCAGAGCTCTCCTAAGCAGTTGTCACATGTTCTCCCTGGGAGACATCCCATGACTTCAATGTCAAAATTTGATTCTAGTAATGAACGAATGAGAAACCTTTATCATCGTAGAAGTGAAGCAAACACCAACAATGTTGATAAAAAACAATATGAACTTGATCTTGGTCGCATATTGCGAGGGGAAGACAGCAGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCAGCAATAGATGAGCAATGTCGGGGAACTTATGATTTTTTATATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAATATGATTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGTTTCTCTTGTTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCCAATGCCGGTGATCCAGAGCCTTTCCCCATGGGTGTCAATATCAGATTGAGACCTGGAAAATCTCGCGGTGCTGGCAATGAGGAGAATCGCAGCCAAGGGAGCCCTTCAACTTTGGCAAGCGGAGAGAGTCTTCTAATGGAATAG 2856 0.4146 MPFQIMDQRGVSASSHFFDDISFRSERNGGLQKPKYINDQYPQGKNGIIASPGSILNASSPLEVNSKSGLLMSQTSLSGGSRDKLHFGGEGIVDMLKDSKESSHYHPKSWSDACIQSAPTSYGLIGNKIVTNAAPRESSLFSSSLSEIFSQKVRLFGNDVLSDHSITVGSLPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDDLGYNSHTGTNDDLEDFDLFSSGGGMELEGDEHLSSRKRTSGLDGDSGFFIGSKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQHAMQALQNRPLRSREIDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELIQIFGFYGEIKEIYENPEMNHHKFIEFYDVRAAEAALRALNRIDIAGKQIKIEPGHPSLMQQSHKGQEERDVGHNIIDNLSLRQKSTVSSGVIGSGCLENGYNQRFQSAMRQPLNAFFHVNSSIHNPMRGASAGKASGVFESSNFVDAMKFASSPRLHPHSLPEYHGRLANGSPYNFSSTISNMAGNIGTGVAEASDVRHIQGMSSTGNLAEFNGGGNGIRPHHGLYHMWNSSNLHQQPSSSNMLWQKTPSFVNGACAPRLPQMPSFARSPPHMLRTPHVDHHVGSAPVVTALPWERQNSYLGESPEASGFHLGSLGSGGFHGSWQLHPLDFPSHNMLSQVGGNGTELSSNAGQSSPKQLSHVLPGRHPMTSMSKFDSSNERMRNLYHRRSEANTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKVSLVAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGVNIRLRPGKSRGAGNEENRSQGSPSTLASGESLLME* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00670 951 Pfam RNA recognition motif 2 787 883 IPR007201 -
Rops2g00670 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Rops2g00670 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Rops2g00670 951 SUPERFAMILY RNA-binding domain, RBD 266 425 IPR035979 GO:0003676
Rops2g00670 951 MobiDBLite consensus disorder prediction 712 749 - -
Rops2g00670 951 MobiDBLite consensus disorder prediction 929 945 - -
Rops2g00670 951 FunFam Protein MEI2-like 1 353 443 - -
Rops2g00670 951 SUPERFAMILY RNA-binding domain, RBD 789 873 IPR035979 GO:0003676
Rops2g00670 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Rops2g00670 951 MobiDBLite consensus disorder prediction 917 951 - -
Rops2g00670 951 Gene3D - 263 352 IPR012677 -
Rops2g00670 951 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Rops2g00670 951 CDD RRM3_MEI2_like 790 875 IPR034454 -
Rops2g00670 951 CDD RRM1_MEI2_like 268 343 IPR034453 -
Rops2g00670 951 PANTHER RNA RECOGNITION MOTIF-CONTAINING 107 935 - -
Rops2g00670 951 MobiDBLite consensus disorder prediction 712 731 - -
Rops2g00670 951 Gene3D - 353 444 IPR012677 -
Rops2g00670 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Rops2g00670 951 SMART rrm1_1 789 865 IPR000504 GO:0003723
Rops2g00670 951 SMART rrm1_1 355 423 IPR000504 GO:0003723
Rops2g00670 951 SMART rrm1_1 270 338 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00670 Rops-Chr2 9514463 9523863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00670 267 426 Eukaryotic Initiation Factors Gene Family AT1G71770 26.036 1.49e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00670 - - gmx:106798747 1573.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00670 2 9514463 9523863 Rops10g00867 10 19681298 19691115 PCT