Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00659 ATGGCATCATCGGAGGTATCCATGAAGGGAAATTCCCTTAACGGAAAAGGAGAAATTAATGCTTGTGGAGGAGAGGGTCAAAATGCTTCTTCTTCTTCTTCATCATCAGCGAGAGACGCAGAAACTGCACTCTACAGAGAGTTATGGCATGCTTGTGCGGGTCCACTTGTGACGGTTCCAAGAGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATTGAGCAGGTGGAGGCATCGACGAATCAGGTAGCGGAACAGCACATGCCTGTTTACGATCTCCCACCTAAGATCCTATGTCGGGTAATCAACGTGATGCTGAAGGCGGAGCCAGACACAGATGAGGTGTTTGCTCAAGTGACCTTACTTCCAGAGCCAAAGCAAGATGAGAATGAGGTAGAGAAAGAGACTCCGCCACCTCCGCCACCAAGATTTCATGTCCATTCATTTTGTAAAACTTTGACGGCGTCTGATACAAGTACCCATGGTGGTTTTTCAGTGCTGAGACGGCATGCAGATGAATGCCTTCCTCCTCTGGACATGTCAAAGCAGCCACCTACCCAGGAATTGGCGGCCAAGGATCTGCATGGGAATGAATGGCGATTCAGACATATCTTTCGAGGTCAACCACGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTAGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGAGTGGGTGTCAGGCGTGCAATGAGGCAGCAGGGTAATGTTCCATCGTCGGTCATCTCTAGCCACAGCATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCCATATTGACTGGGACCATGTTTACTGTTTATTACAAACCTAGGACCAGTCCAGCTGAATTTATTGTTCCATATGAGCAATACATGGAGTCTCTCAAAAATAATTATACCATAGGTATGCGGTTCAAAATGAGGTTTGAGGGTGAAGAGGCTCCTGAACAAAGGTTTACGGGTACCATTGTTGGAATTGAAGATGCTGACCCCAAAAGATGGCCAAAATCTAAATGGAGAAGTCTCAAGGTGAGATGGGATGAAACATCGAACATACCTCGTCCTGAGAGAGTTTCCCCATGGAAAATAGAGCCTTCTCTTGCACCTCCAGCTCTAAATACTCTTCCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGTGGTTCCATCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGTAAGCATAGACCCTTTACCAGCAAGTGGGTATCCAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGATAGGTAATTTTGCGGAAAGCAATGAGTCTGATACTGTGGAGAAGTCTGTTGTGTGGCCACCTGCAGCAGATGATGAAAAGATTGATGCTGTTTCTACTTCAAGAAGGTATGGATCAGAGAGCTGGGCTTCAATGGCGAGGCATGAGCCAACATATTCAGATCTTCTTTCAGGCTTTGGGGCCCATGGAGATCATTCTTCCCATCCATCATTTGTTGATCAAACTGGTCAGGTAGCTATCCCTGGTAGGAAAAGTCTATTGGATCGTGAAGGCAAACACAATGTTCTTGGTCCATGGCCTGTAATGCCATCTAGTCTATCACTCAACCTCTTGGATTCTAATACAAAAGGTTCTGCACAAGGCAGTGATACAACTTATCATCAAGTTCGAGGGAATTTGAGATATAGTGCATTTGGTGAATACTCTGTGCTTCATGGACACAAGGTTGAACATCCACATGGAAACTTTTTGATGCCTCCGCCACCACCAGCTCAATACGAGAGTCCTCATTCAAGAGAACTGTTACCCAAACAAATATCATCAAAAACTTGTCAGGTTGCAAAACCAAAAGATGGTGACCGAAAGCTATTTGGTTTCTCACTTCCTGTTGCAGCAGAACCTTCTATATCACCAAATGTTGCAAGTGAGCCAGTTAGTAACATGCATCTGACATCACAACAACATTCCACATTTGAATATGATCAGAAGTCTGAACATTCAAGGGGCTCAAAACTGGCAGATGGTCAAGTTGTAGTTGATGACCATGAGAAGTTGTTACAAACTTCTCAGCCACATCTTAAAGATGTTCAACTCAAACCTCACAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTCGGTAGGTCAGTGGACCTTACGAAGTTCAATGACTATGATGAATTAATTGCTGAATTGGATCAACTGTTTGAATTTGGAGGTGAATTAGTTTCTCCTCAAAAGGATTGGCTTGTTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTTTGTGCCATGGTCCGCAAAATTTATATCTACCCGAAAGATGAGATTCAGAAAATGAGCCCGGATATGATTACCATAGCATCTTCCAGATTATGGTCTGGAGTGGAAAGTAGTAGGGGACTGTCAAAAAGCCATCCAGTTAGAGGATATGACCTGAAGAAGAAACTTTTAATTCTGAATCTGACTGGCCTTATCAAGTGA 2571 0.445 MASSEVSMKGNSLNGKGEINACGGEGQNASSSSSSSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPKQDENEVEKETPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPKSKWRSLKVRWDETSNIPRPERVSPWKIEPSLAPPALNTLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSIDPLPASGYPRVLQGQELSTLIGNFAESNESDTVEKSVVWPPAADDEKIDAVSTSRRYGSESWASMARHEPTYSDLLSGFGAHGDHSSHPSFVDQTGQVAIPGRKSLLDREGKHNVLGPWPVMPSSLSLNLLDSNTKGSAQGSDTTYHQVRGNLRYSAFGEYSVLHGHKVEHPHGNFLMPPPPPAQYESPHSRELLPKQISSKTCQVAKPKDGDRKLFGFSLPVAAEPSISPNVASEPVSNMHLTSQQHSTFEYDQKSEHSRGSKLADGQVVVDDHEKLLQTSQPHLKDVQLKPHSGSARSCTKVHKKGIALGRSVDLTKFNDYDELIAELDQLFEFGGELVSPQKDWLVVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKDEIQKMSPDMITIASSRLWSGVESSRGLSKSHPVRGYDLKKKLLILNLTGLIK* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00659 856 SUPERFAMILY CAD & PB1 domains 724 798 - -
Rops2g00659 856 Gene3D - 717 810 - -
Rops2g00659 856 SMART B3_2 150 252 IPR003340 GO:0003677
Rops2g00659 856 SUPERFAMILY DNA-binding pseudobarrel domain 146 279 IPR015300 -
Rops2g00659 856 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Rops2g00659 856 FunFam Auxin response factor 716 810 - -
Rops2g00659 856 MobiDBLite consensus disorder prediction 402 417 - -
Rops2g00659 856 FunFam Auxin response factor 313 385 - -
Rops2g00659 856 ProSiteProfiles PB1 domain profile. 721 803 IPR000270 GO:0005515
Rops2g00659 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 810 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops2g00659 856 Pfam AUX/IAA family 767 808 IPR033389 -
Rops2g00659 856 Gene3D - 147 252 IPR015300 -
Rops2g00659 856 MobiDBLite consensus disorder prediction 124 143 - -
Rops2g00659 856 MobiDBLite consensus disorder prediction 370 426 - -
Rops2g00659 856 Gene3D - 313 383 - -
Rops2g00659 856 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Rops2g00659 856 CDD B3_DNA 148 250 IPR003340 GO:0003677
Rops2g00659 856 MobiDBLite consensus disorder prediction 127 141 - -
Rops2g00659 856 MobiDBLite consensus disorder prediction 386 400 - -
Rops2g00659 856 FunFam Auxin response factor 148 252 - -
Rops2g00659 856 MobiDBLite consensus disorder prediction 1 35 - -
Rops2g00659 856 Pfam Auxin response factor 276 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00659 Rops-Chr2 9344533 9349067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00659 1 818 B3 DNA Binding Superfamily AT5G62000 64.554 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops2g00659 B3 3.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00659 - - gmx:100815956 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00659 2 9344533 9349067 Rops10g00862 10 19584494 19588984 PCT