Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00647 ATGTCTTCTTTGGAGGAGCAACCCCATATAAACACTTCCCTTCCTCCTCATTATTTTCACATTCATCAGGAAACTTCATTTAGTGTCACAAATCAAGAAACTAGCTGTGTTGATCAAAGCTCCAAGATTACCATTAGTGACACTGAGCTTTCTGTGGTGAAAAACCAGAGTCCTGAGACCTCCATGGTGGTGGACAAGCTTGAAAATGGTGAACAAGTTACTCAGAAGGTGGCTCCTGTGGAGGAGAAGAAGAAAAGAGCCAGAAATGGATCCTCCTTGAGTAGCCCCTTATCTAAGGACTCAACAGAAGGAGGAAACAAGAAACAAAAGAAGAACAATGATGGGGTGAAAGGAGAGGACAAGCCAAAAGAAGAGAAGAAGGATCAGAAAAAAGGTCCTGAAGAGCCTCCTACTGGCTATATCCATGTAAGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTTAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACAGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTTTTGTCAATGAAACTTGCTTCCGTGAATCCCATGTTCTTGGACTTGGCAATGGACTTAGACACTCTCTTGGTTAAACCAGATCATAAATTAAATAGCATGGCATCACCATCAGCACTACCGGATGTACCACTATGCAGTCCCAACCATACCACAGCTTTTGCTGATGCAACTACCCTGACCACAACCAGCAACTTCCCTGCTACTAATAATGATTATCTTTTGGATTATTCATCTTCAGCATTTCTTCAAGGGCAAAGGTCAAATCTCTTCAGCGAGTATACCGGTGGTCCATTTTGGGATGCAGAAGATCAACGACAAAAGTTTCTTAATCCATATGGATTCGGCAACAACTCATGTTTCTTAAATTAA 984 0.4217 MSSLEEQPHINTSLPPHYFHIHQETSFSVTNQETSCVDQSSKITISDTELSVVKNQSPETSMVVDKLENGEQVTQKVAPVEEKKKRARNGSSLSSPLSKDSTEGGNKKQKKNNDGVKGEDKPKEEKKDQKKGPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFLDLAMDLDTLLVKPDHKLNSMASPSALPDVPLCSPNHTTAFADATTLTTTSNFPATNNDYLLDYSSSAFLQGQRSNLFSEYTGGPFWDAEDQRQKFLNPYGFGNNSCFLN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00647 327 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 254 IPR024097 GO:0006355
Rops2g00647 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Rops2g00647 327 MobiDBLite consensus disorder prediction 61 157 - -
Rops2g00647 327 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Rops2g00647 327 FunFam Basic helix-loop-helix transcription factor 146 218 - -
Rops2g00647 327 Gene3D - 146 217 IPR036638 GO:0046983
Rops2g00647 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 216 IPR036638 GO:0046983
Rops2g00647 327 CDD bHLH_AtBPE_like 139 224 - -
Rops2g00647 327 SMART finulus 155 205 IPR011598 GO:0046983
Rops2g00647 327 MobiDBLite consensus disorder prediction 103 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00647 Rops-Chr2 9243981 9246552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00647 64 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 50.917 3.54e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g00647 HLH 9.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00647 - - gmx:100790417 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00647 2 9243981 9246552 Rops2g00647 2 9243981 9246552 ECH