Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00642 ATGGATGATGGATGCCAACATGAAAATGGTAGGCATAAGATGGAATACTACAGAGGAGCACATTCCCTGTGGAACACAGATCCCCAGCATCAAGTAAAGGAGCCAAATGCACTAGTTATGAATAAGAAAATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGAACTTAAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCCTGGCTGCTCGAGATGTAGCCATTAGGCAGAGGGATGAAGCACTTGCTCAGAGAGATAATGCCCTATTGGAACGGGATAATGCCCTGGCAGCCCTTCAAAATAGAAACAATTCTGTCAACTTCCCATTCAATGGTGGAATTCAACGTGGATCAAAGCGGATGCACCATTCTTCAAGCCATCTTTCCAACATGACGGAAGTTGCATATGGCACAAAGGATATGATAATAAGGGATGCCTCCCCAGTGACTGTTATAACTTCAGAAGCTGTCAAATCTCATCAAACCAAGAGAACGAACGAGAACAAGGTAATCAATTCTAAGGCATCAAAGACACTTAGCAAAGTAAAGAAAATGGGCGAGGATTTAAATAGACAGGCTTCCTCTGAAGGGACAAAGATCAAATCTGAATGGGATAGGCAGGATGTTGGCTTGAATTTGGTTGCATTTGATGAAACTATCATGCCGGTCCCAGTTTGCACATGCACTGGAGTACCACGACAGTGCTACAAATGGGGCAATGGTGGGTGGCAGTCATCTTGTTGTACCACCACATTGTCAGTGTATCCACTACCACAGCTTCCAAACAAGCGCCATGCCCGCATTGGAGGGAGAAAGATGAGTGGAAGTGTCTTTACAAGACTTCTCAGTAAGTTGGCGTCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGAACTACTGGGCCAGACATGGAACAAATCGCTATATTACTATCAAGTAG 954 0.4392 MDDGCQHENGRHKMEYYRGAHSLWNTDPQHQVKEPNALVMNKKIRSIMAERQAAILELKLEAAISEKNEALAARDVAIRQRDEALAQRDNALLERDNALAALQNRNNSVNFPFNGGIQRGSKRMHHSSSHLSNMTEVAYGTKDMIIRDASPVTVITSEAVKSHQTKRTNENKVINSKASKTLSKVKKMGEDLNRQASSEGTKIKSEWDRQDVGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSKLASEGHDLSIPLDLKNYWARHGTNRYITIK* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00642 317 SMART GAGA_bind_2 1 317 IPR010409 -
Rops2g00642 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
Rops2g00642 317 PANTHER - 1 317 IPR010409 -
Rops2g00642 317 Coils Coil 53 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00642 Rops-Chr2 9153385 9175373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00642 1 317 BBR or BPC Transcription factor family AT2G21240 57.367 2.97e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Rops2g00642 GAGA_bind 1.4e-99 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00642 - - gmx:100813103 587.415