Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00638 ATGGAAAAGCTGAATTTTGTTAAAAACGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAGCCAACAGATGAAGAACTTGTGTTTCAGTACTTGAAATGTAAGATCTTCTCATGCCCCTTGCCTGCTTCCATTATTCCTGAGATCAATGTCTGCAAATATGATCCTTGGGAGTTGCCAGGTAACAGTGATCAACAAGAGAGGTACTTTTTCAGCTCAAAAGAAGCAAAGTATCGAAATGGTAATCGAATGAACCGAACAACAAACTGTGGCTATTGGAAGGCAACAGGGTCAGACAAAAAAATAACATCTTCAAGGTGTAATGATATTTTGGGGATAAGAAAAACCCTGGTATTTTATGAAGGGAAATCGCCAAATGGGTCAAGAACTGATTGGGTCTTGCATGAATATCGCCTTGTTAGTGTAGAAACTAGTGCTTGCAACTCAACCCAAAATGAGATAGGAGATTGGGTTCTGTGTCGCTTAGTGATGAAGAAAAGAAGTATGGAAAGTGATGGAAGCACCACTCATCATCACATGCATAGGCAAAATACAACAGTTCGAGCTTCTCCAAGATTGTTTGATTTTATGATGACATGTTCTTCTGCATCATCATCATGTTCAAGTTCAAGTAACATGTTAGAGGTCTCATCTAATGCACAGGACCATGAAGAAACAAGTGGCCATGCTGATTTCTAA 699 0.3963 MEKLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCPLPASIIPEINVCKYDPWELPGNSDQQERYFFSSKEAKYRNGNRMNRTTNCGYWKATGSDKKITSSRCNDILGIRKTLVFYEGKSPNGSRTDWVLHEYRLVSVETSACNSTQNEIGDWVLCRLVMKKRSMESDGSTTHHHMHRQNTTVRASPRLFDFMMTCSSASSSCSSSSNMLEVSSNAQDHEETSGHADF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00638 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 208 - -
Rops2g00638 232 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Rops2g00638 232 MobiDBLite consensus disorder prediction 205 232 - -
Rops2g00638 232 ProSiteProfiles NAC domain profile. 14 165 IPR003441 GO:0003677|GO:0006355
Rops2g00638 232 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Rops2g00638 232 MobiDBLite consensus disorder prediction 205 221 - -
Rops2g00638 232 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00638 Rops-Chr2 9135632 9137237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00638 1 168 NAC Transcription Factor Family AT5G13180 64.881 8.24e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g00638 NAM 8.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00638 - - gmx:100812015 369.007