Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00613 ATGGCTGCAATTCACAAAATACTGAATGTTGTGTTGCCCCCATTATCACTGGTTCTGCTCTCCATCTTCATGCTACCTTTTCTTTTCTTCAAGCTGCTTAGTTATGTAAAAAAATTGGTGTACCCCGAAAACTTGGCAAGGAAAGTAGTACTAATCACTGGAGCAGCCTCAGGGGTTGGCGAGCAACTAGCTTATGAGTATGCTAGGCAAGGAGCAATCCTGTCCCTGGTGGACATTAGAAAGGACAATCTTGTGGCAGTGGCTGATAAAGCAAGATCTTTGGGTTCCCCTGATGTTACCATCATTGGTGCCGATGTGTCCAAGGTCGAAGATTGTAAGCGGTTTGTTGATGAAACGGTCAACCAATTTGGACAACTGGATCATCTGGTAAATAATGCTGGAATTATCAGGCTTTTAGGGGTGGAGAATTGGCGTGATGTTTCTGAATTCACTCCAGTTATGGACACAAATTTCTGGGGAGTAGTTTATGGAACTTTATATGCAATCCCACATCTCAAAAACAGCAAAGGCAAGATCATAGTAATTGCTTCATCTGGTGGATGGTACCCAATTCCAAGACTGAAAGCTAAGAGCCAAATGGCAGCAGCAGGGGCTTCAAGAAAGGTTGGTCAAGAATTGAATTGCATTGAGGCCAGTTGCTTCAAGTTGTCTTTTGTTATTATCACAGCAGCAACCTTTGTTGGTGCCATTATTTCTCTCATTTTAGTGGCTAGAACCATTAAGTTTTATAAAGGTGAGATATACAAGAGGTACTGGGAGCAGGTTAAAGGAGCCACGACTGAGATGGCGGTGGTCCAATACGGCGGCGAGAGAGAACAAGAACCCAAGGGGATGTCTTTATGGACCTCAAAGAGGCACTCTTGCAGCAGTGTCCCTCTTAATGGAAGCCAAAGTTGTGGCTCCTTAACTGATAGCCCCCCTTATCACCCTCTGAACAATATCAAGGCAAGCAAGGCAGCGGTCATAAGCTTCTTTGAGACTCTGAGAATTGAACTCGGTTGCTCTATTGGTATTACAATCGTCACTCCCGGTCTTGTCAAAACGGACCTGGCATTGAAGGCCATTGAATGTGAGGCTAATGTGGGAAGAATTCCAATGGTGTCAGCATGTGAATGTGCTAAGGCCATAGTGAAAAGTGCATGTAGGGGAGATATGTATGTGACAAACCCTTCATGGATGAAAGTACCGTTTCCTTGGAAGGTGCTTTATCCTGAGTGCTCCGACCACCAGCAGCCATCAGGGGAGGCGGCGACAAGCCAACAGAATCATTGCAGAGGCATTTTAGGAGATTCGGAGGTTACTAATCCTGAATTGAATGTCAGAATCTCTAAAGGTAATTTGGAGCAATCTCTGCTGGGCATTATTGTGGATAGTTTGAATTTGAAAGAGACTGAGATTCTTCATGGTGATTGGCTGATGGTTACTAGGAGAAAGAAACAATCATGGGGAGGTCTTAATTCCGGAATAAATAAGACAGGTCAGCAAATATTTACTGCTAATAATAAGGCTTCCGCGTTATCAGGGTGCCTAAAGTTTGATGGTGGGCCGTCTACTAGAGTTGGTCCAATTGCTAGTAAGGGTAAGCAGATCGTTGAATCAAGGAGCCAATCTAGGAAGAAACGGTCACGTGTGGACTCGGGGTCTTCTCTCTCTGCGCATAAGATAGGCCCAATCAAGCATCAACAGTTTAGATTGGGGCACACGACAAAAGGTCCTGTTGCCTCGGTGGAGGGCTCCGACCAAGTTGCCTTTACCCAGCCTCCAGTTGGGTCCCACGATGGTCATACGATGGAGGAAGAGAGTTATTACAAGGAGTGTATGGAGGAGGAGCCTGGATTAAACTCTTCTATCATAGATGCGACCAAGAGTGGGGTTGTTATTAAGTCAGATACTTAG 1917 0.4507 MAAIHKILNVVLPPLSLVLLSIFMLPFLFFKLLSYVKKLVYPENLARKVVLITGAASGVGEQLAYEYARQGAILSLVDIRKDNLVAVADKARSLGSPDVTIIGADVSKVEDCKRFVDETVNQFGQLDHLVNNAGIIRLLGVENWRDVSEFTPVMDTNFWGVVYGTLYAIPHLKNSKGKIIVIASSGGWYPIPRLKAKSQMAAAGASRKVGQELNCIEASCFKLSFVIITAATFVGAIISLILVARTIKFYKGEIYKRYWEQVKGATTEMAVVQYGGEREQEPKGMSLWTSKRHSCSSVPLNGSQSCGSLTDSPPYHPLNNIKASKAAVISFFETLRIELGCSIGITIVTPGLVKTDLALKAIECEANVGRIPMVSACECAKAIVKSACRGDMYVTNPSWMKVPFPWKVLYPECSDHQQPSGEAATSQQNHCRGILGDSEVTNPELNVRISKGNLEQSLLGIIVDSLNLKETEILHGDWLMVTRRKKQSWGGLNSGINKTGQQIFTANNKASALSGCLKFDGGPSTRVGPIASKGKQIVESRSQSRKKRSRVDSGSSLSAHKIGPIKHQQFRLGHTTKGPVASVEGSDQVAFTQPPVGSHDGHTMEEESYYKECMEEEPGLNSSIIDATKSGVVIKSDT* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00613 638 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Rops2g00613 638 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Rops2g00613 638 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Rops2g00613 638 Pfam short chain dehydrogenase 48 195 IPR002347 -
Rops2g00613 638 PANTHER RETINOL DEHYDROGENASE-RELATED 46 426 - -
Rops2g00613 638 MobiDBLite consensus disorder prediction 524 572 - -
Rops2g00613 638 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 193 IPR036291 -
Rops2g00613 638 Gene3D - 33 226 - -
Rops2g00613 638 Gene3D - 302 423 - -
Rops2g00613 638 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Rops2g00613 638 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Rops2g00613 638 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 321 340 IPR002347 -
Rops2g00613 638 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 314 406 IPR036291 -
Rops2g00613 638 MobiDBLite consensus disorder prediction 539 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00613 Rops-Chr2 8752839 8763278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00613 163 261 Nodulin-like Gene Family AT2G39210 42.424 1.35e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00613 K22418 - gmx:100808990 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00613 2 8752839 8763278 Rops2g00613 2 8752839 8763278 ECH