Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00603 ATGCAATTGAGTAGCATCTTGGTGTCATGTACAGTAAACAAAGATAAGAGGAAGTTTGAAGAACCAGAGCTGCTAAAGTGGAAGTCATTTGTTATGGACTGGAACTTGAAAGCACCTTCTTGGGATTTTAGTGAAGTAGACCAAGCAACCTTACCCAACTCAGAAACAGTGGAAGGGTCAAGCAGATTTGGAGTATATAGAACCAAAGGGGATTTTTCTGTGGACTTGAAGCTTGGCCAAGTTGGGAATTCTGGCACTATATCGGTGCTGAACAAGTCCAAAGATGTTGCTGGGGTCTCAAAAATGACATCCTCATCTTCAGGGTCATCTAAGAGAGCTAGAGCCATTAACAATGGGACTCAGACAGTGTCATGCCTTGTGGATGGGTGCCAATCAGATCTTAGTAACTGCAGGGACTATCATAGGAGACATAAGGTCTGTGAACTCCATTCCAAGACTGCACAGGTCACAATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGATTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTCACGCGATCTGGTAGTTTTTTGTCTAATTACCAAGGTACCCAGTTGCTACCCTTCTCTAGTTCACACGTATACCCTTCCACTGCTGTGATGAATCCTGCTTGGGGTGGAGGAGTTGTTACCTCCTGTGCAGATGTTAGGCTCCATAGCCACAACCAACACCAACAACAAGTGCATTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCTCCAACCAGCTATAAAGAAGGGAAGCAACTTGCATTCATACAAGGTGACCAGCACAATGCCACTCTCAACAACCAAAATCCACATCTTCCAGCTACTTCCATGAGCCACACGTTTCGCAGGACCAGCCCTTTTTCAGAAAGTGGTGGTCTAAGATGCAAAATGTTCTGTGATAGCTTAACAAGTTCAGTTCACGACTCCTCTTGTGCTCTCTCTCTTCTGTCATCATCATCATCACAGACGCACAATCCTGGAAATGGATTAAACCAAATGGTGAATCCTCACTCATCCCTTATGCAACAACCCTTAGGCCTGAGCCTGCATGATAATAGCAGCTTGGGGTCTGTGGACCCAGTTTTGGGTCCAAATGGGAGTGACCATTGTTCCCCAATGTATAACATAGGTTCTACTGGATCCCAAGGGAATGAACCACCTCCAATATTTCCATTTCAATGGGAATAG 1281 0.4512 MQLSSILVSCTVNKDKRKFEEPELLKWKSFVMDWNLKAPSWDFSEVDQATLPNSETVEGSSRFGVYRTKGDFSVDLKLGQVGNSGTISVLNKSKDVAGVSKMTSSSSGSSKRARAINNGTQTVSCLVDGCQSDLSNCRDYHRRHKVCELHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTAVMNPAWGGGVVTSCADVRLHSHNQHQQQVHLVDKQDLFLGSSPTSYKEGKQLAFIQGDQHNATLNNQNPHLPATSMSHTFRRTSPFSESGGLRCKMFCDSLTSSVHDSSCALSLLSSSSSQTHNPGNGLNQMVNPHSSLMQQPLGLSLHDNSSLGSVDPVLGPNGSDHCSPMYNIGSTGSQGNEPPPIFPFQWE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00603 426 ProSiteProfiles Zinc finger SBP-type profile. 122 199 IPR004333 GO:0003677
Rops2g00603 426 FunFam Squamosa promoter-binding-like protein 14 116 186 - -
Rops2g00603 426 MobiDBLite consensus disorder prediction 188 210 - -
Rops2g00603 426 Gene3D - 116 186 IPR036893 GO:0003677|GO:0005634
Rops2g00603 426 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 408 IPR044817 GO:0003677
Rops2g00603 426 SUPERFAMILY SBT domain 123 204 IPR036893 GO:0003677|GO:0005634
Rops2g00603 426 Pfam SBP domain 125 198 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00603 Rops-Chr2 8590684 8593724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00603 32 426 SBP-box Gene Family AT5G50670 42.543 1.96e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops2g00603 SBP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00603 - - gmx:100806507 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00603 2 8590684 8593724 Rops2g00603 2 8590684 8593724 ECH
Rops2g00603 2 8590684 8593724 Rops10g00825 10 18923053 18926622 PCT