Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00594 ATGGGAGAGAAACTAAAAAGGCAGATTGGCTTGATCCCAGTGAAGTTGATCCCCAACTACTATGTAGTTTCTAGTGTTGGGCTTGTCAAACCTTATGATTTAGGAGCTGTTCCACATGTTGATACAAGTGAAACTCTTCCTGAGAGACCAGGAGAACCAAATTGTCCATACTTTTTGAAAACTCAAAGACACAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGTTTCCTCTGAAAATGCTGATGTTGGTTTACCTGATAGGCAATTAGAGCCCCTTTGTGTGTTCTACATGAAAACTGGAAGATGTAAATTTGGTGCTGCATACATAAATAAATCCTATATTGAAAGGGCAGCAGGAGATACACAACCAATTACGCCTCTTGTATCTCCATTGTTGCATAATAGCAAAGGGCTTCCTATCAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGGAAAGAGCCACTTTTTCCTGGAAAAAATGTAGTCCATCAGTTGGATCGGATAACAAATCTACTTGGGACTCCCTCACTGGATACTATATCACAGCAAGTAGCATGTCCATCTGCAGATGGAAGGCAACTCCTAGACTCCTCCAAAACAACTTTGTACAAGGGAAAGCTTGAAGATGCGGTTACCTATGGAACAAATGTGTTCTTGCTAAGATGGTAG 687 0.409 MGEKLKRQIGLIPVKLIPNYYVVSSVGLVKPYDLGAVPHVDTSETLPERPGEPNCPYFLKTQRHKFGSRCKFNHPKVSSENADVGLPDRQLEPLCVFYMKTGRCKFGAAYINKSYIERAAGDTQPITPLVSPLLHNSKGLPIRLGEVDCPFYMKTGRKEPLFPGKNVVHQLDRITNLLGTPSLDTISQQVACPSADGRQLLDSSKTTLYKGKLEDAVTYGTNVFLLRW* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00594 228 PANTHER PROTEIN PHOSPHATASE RELATED 42 157 - -
Rops2g00594 228 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Rops2g00594 228 SMART c3hfinal6 89 110 IPR000571 GO:0046872
Rops2g00594 228 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Rops2g00594 228 Gene3D - 39 111 - -
Rops2g00594 228 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00594 Rops-Chr2 8498103 8501616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00594 44 157 C2H2 Transcription Factor Family AT5G18550 39.167 1.66e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g00594 zf-CCCH 3.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00594 - - gmx:100793976 176.407