Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00586 ATGTGGGGTTGGATCATTTGGGAACAACGGCGCAAGGCATTGTCGGAGCTCGCATGGAACTTGAGATTGGTCCGCCACATGGGTGGTGGTCCTCGGACATTTCCCGGCGGAGTAAGCAAGTGGAAATGGAAACGCATGCACGAGAAACAAGCCAGAGACAAAGAGAGAAGACTCCTTGAACAAGAAAAGCAACTCTACCAAGCTCGCATTCGCTCTCACATCCGCTCCTCCCTCTCCCCTTCCTCATCCGCCGCCGCTTCTTCCCACCGCCCTCTCACCCCACGTGACCACATCAAAGCCCTCGCTGATCGTTTCATGAAAGAAGGCGCCCAAGATCTCTGGAACCGGGATGATGGTCCCCTAACACCGCCGCCACCGCCGTCCACACCCTCACCGCCGGTGGATTTGCGAAAACTCATAACTAAACCTCCGAATCGGAATTCCTCGAATTATATTCAGACTAGGGATTATTGCTCTGTTCCTGAACGACATCGTTTTAGCACCAACAAGCGCAGAATTTGGAGAAACCATGGTTCTGATAGTGACAGTGGGAGTGAGAGTGAAATGGAATCTCAGGGTCGTTATTCGAATATTGGAAGCAGTGCTTCATTGGGGAAATATGATTTGAAGAGGGAAAGGAGGGTGATGCCTAAGTCATATGATGAGGAAATTGATTTTAAGGAGCAGGTTGAGTTGATCAAGTATGAGCTTAATAAGAGGAAGTTGAGTCAGAATGAGGAACAACAAACTATACTGACCCAGACAAGATTTGACCAGTGCGGTATATCACCATTGACAGTCAAGGCACTTTCTTCGGCTGGTTATATTCATATGACCCGAGTACAAGAGGCTAGCCTCCCTATTTGCCTTGAGGGTGTGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCCTTTTTGCTTCCTGCTATTGAAACAGTTATTAAAGCTATGAGTAGTAATACCTCTCATCGCGTGCCTCCGATACATGTTCTTATTCTCTGCCCTACTAGAGAACTTGCCAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAATATCACGATGGCATTGGGGTGCAGACTCTAGTAGGAGGTGTACGATTTAAAGTCGACCAGAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGATTAATGGGCCTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGGTTTCGAAAGGATATAGAAAAAATCGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGCTATTTTCTGCAGCTGTCCCAAAGGAGGTCCGTCGTACATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATTGGTTGTGTGGAAACTCCTGTTCAGGTAACGCAATCGTTTCTTATCGCTCCTCATGAATCACATTTTCAAATAGTATACCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTCTTTTGTGTAACTGGGATGGTGACATCACTCATGTATCACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATGCATTCTCGAAAACCTCAACTCTATCGAACTCGCATATCTGATGAGTTCAGGGAATCCAAAAAACTGATTCTTGTCTCTTCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCTTCAGACCGTGAACAGTATATATATCGTCTTGGAAGAACAGGACGGGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCTTGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTCCCCCTAAAGAAATTCCCCTTACCAGATATAGATCCACAGACAAAGCTTAAGGTTGAGCATTCAATGGCAAAGATTGATAATGACATCAAAGATGCAGCTTATCATGCTTGGCTTGGTTATTATAATTCCATCAGGGAAATTGGGAGGGAGAAGTCAACATTAGCTGAGCTGGCAACCCGATTTTCTGAATCAATTGGTTTACAGAGACCTCCTGCTCTCTTCAGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 2175 0.4432 MWGWIIWEQRRKALSELAWNLRLVRHMGGGPRTFPGGVSKWKWKRMHEKQARDKERRLLEQEKQLYQARIRSHIRSSLSPSSSAAASSHRPLTPRDHIKALADRFMKEGAQDLWNRDDGPLTPPPPPSTPSPPVDLRKLITKPPNRNSSNYIQTRDYCSVPERHRFSTNKRRIWRNHGSDSDSGSESEMESQGRYSNIGSSASLGKYDLKRERRVMPKSYDEEIDFKEQVELIKYELNKRKLSQNEEQQTILTQTRFDQCGISPLTVKALSSAGYIHMTRVQEASLPICLEGVDALVKAKTGTGKSAAFLLPAIETVIKAMSSNTSHRVPPIHVLILCPTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSAAVPKEVRRTSQLVLKREHKYVDTVGIGCVETPVQVTQSFLIAPHESHFQIVYHILKEHILQTPDYKVIVFCVTGMVTSLMYHLLREMKMNVREMHSRKPQLYRTRISDEFRESKKLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIYRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLKKFPLPDIDPQTKLKVEHSMAKIDNDIKDAAYHAWLGYYNSIREIGREKSTLAELATRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00586 724 Gene3D - 479 702 IPR027417 -
Rops2g00586 724 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 255 283 IPR014014 GO:0003724
Rops2g00586 724 PANTHER RNA HELICASE 221 650 - -
Rops2g00586 724 SMART ultradead3 274 487 IPR014001 -
Rops2g00586 724 SMART helicmild6 527 608 IPR001650 -
Rops2g00586 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 469 IPR014001 -
Rops2g00586 724 MobiDBLite consensus disorder prediction 171 201 - -
Rops2g00586 724 MobiDBLite consensus disorder prediction 185 201 - -
Rops2g00586 724 Coils Coil 44 64 - -
Rops2g00586 724 Pfam Helicase conserved C-terminal domain 502 607 IPR001650 -
Rops2g00586 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 653 IPR001650 -
Rops2g00586 724 MobiDBLite consensus disorder prediction 113 152 - -
Rops2g00586 724 MobiDBLite consensus disorder prediction 72 89 - -
Rops2g00586 724 Gene3D - 220 470 IPR027417 -
Rops2g00586 724 MobiDBLite consensus disorder prediction 72 94 - -
Rops2g00586 724 MobiDBLite consensus disorder prediction 119 133 - -
Rops2g00586 724 Pfam DEAD/DEAH box helicase 279 457 IPR011545 GO:0003676|GO:0005524
Rops2g00586 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 625 IPR027417 -
Rops2g00586 724 CDD SF2_C_DEAD 484 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00586 Rops-Chr2 8438341 8442382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00586 255 634 Eukaryotic Initiation Factors Gene Family AT3G19760 28.021 1.23e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00586 - - gmx:100808520 1072.77