Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00583 ATGGCGTTCAGCGGAACACAACAGAAATGCAAGGTTTGCGATAAAGCCGTTCACTTCATCGATACTTTATCTGCCGATGGTGTCATTTATCACAAGAACTGCTTCAGATGTCACCATTGCAATGGCCGTCTCGTGATAAGCAACTACTCATCAATGGAAGGAGTTTTATACTGCAAGCCTCACGGTGAACAGCTTTTCAAGGAAACCGGCAACTTCGCCAAGAAATTCCAGTCAGCTGGAAAGCCTCCAAACGAGCTGCCTAGGGCCCCAAGCAAACTTTCTGCCTTCTTCTCTGGGACTCAAGACAAATGTTCATCATGCAAGAAAACCGTTTATCCATTAGAAAAGTTGACCGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGATGTACACATGGTGGATGTGTTCTCACCCCTTCATCCTATGCTGCTCTTGATGGATTTCTATACTGCAAGCCCCACTTCTCTCAATTGTTCAAGGCCAAAGGTAGCTATAGTTATCTCTCCAAGACAGCTTCATTGAAGAAAAATGGAATGCAAGAACAGGCTTCTGAGTCAGCATCAGATTCAGAGACAACAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCTGCCCAAACACAAGAAGAGTAG 639 0.4397 MAFSGTQQKCKVCDKAVHFIDTLSADGVIYHKNCFRCHHCNGRLVISNYSSMEGVLYCKPHGEQLFKETGNFAKKFQSAGKPPNELPRAPSKLSAFFSGTQDKCSSCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCVLTPSSYAALDGFLYCKPHFSQLFKAKGSYSYLSKTASLKKNGMQEQASESASDSETTKEEEEEEEEEDAAQTQEE* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00583 212 MobiDBLite consensus disorder prediction 192 212 - -
Rops2g00583 212 Gene3D Cysteine Rich Protein 98 168 - -
Rops2g00583 212 Gene3D Cysteine Rich Protein 4 74 - -
Rops2g00583 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Rops2g00583 212 FunFam LIM domain and actin-binding 1 98 168 - -
Rops2g00583 212 SMART lim_4 9 61 IPR001781 -
Rops2g00583 212 SMART lim_4 103 155 IPR001781 -
Rops2g00583 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Rops2g00583 212 Coils Coil 181 212 - -
Rops2g00583 212 Pfam LIM domain 10 61 IPR001781 -
Rops2g00583 212 Pfam LIM domain 104 159 IPR001781 -
Rops2g00583 212 MobiDBLite consensus disorder prediction 176 212 - -
Rops2g00583 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Rops2g00583 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Rops2g00583 212 FunFam LIM domain and actin-binding 1 4 74 - -
Rops2g00583 212 CDD LIM1_SF3 6 68 - -
Rops2g00583 212 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Rops2g00583 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Rops2g00583 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Rops2g00583 212 PANTHER OS06G0237300 PROTEIN 5 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00583 Rops-Chr2 8413765 8415799 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Rops2g00583 LIM 4e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00583 - K24413 gmx:100499865 322.398