Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00567 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGGTCTGCTTCTTATTACATACATAGAGGAGGGGTTGCAGGGTCTGGTTCTGGGGCACAAACTGTAGGAGGGGGGTTCCAAGCACCACCTGGGTTTAGAGCTTTGTCAAACACTGGCATTCCAGCTCAGTCAAATGCCAAGGTTCAGGGTGGTTCTGTTGGTTCTAGTTCCTCATTTTCAGTAGAGCCTCAGGGTCATACCAATTTTAATCACGGCATTAGCATTGGTGCCTCTTTTGGGGCACCTTCAGGTGAGACTGTGAAAAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGGTGGACCAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGTTAATTCTACTCTGGGTTCAACCACACCTTCCCAGAAAAAGGGTAGAGGGCGTCCTCCTGGATCTGGAAGGAAGCAACAGCTATCTAATTTAGGTGAATGGATGAATAGTTCAGCAGGGCTGGCCTTTTCCCCTCATGTTATCACAATTGGTGTTGGGGAGGACATTGTAGCAAATTTATTGTCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCAGGCACTGGAACAGTTTCTTCAGTTACTCTGCGACAGCCTGCTTCTACCAATGCCAGCATGACTTATGAGGGACGATTCCAAATATTATGCTTGTCTGGTTCGTACTTAGTTGCTGAAGATGCCGGACCCTCCAAGAGAACAGGCGGCATAAGTGTTTCTCTTTCTAGCCCTGATGGTCAGGTTATTGGTGGCGGTGTTGCTATGCTTATTGCTGGAAGCCCAGTGCAGGTGGTAGTGTGTAGTTTTGTATATGGTGGCCCAAAGACAAAGCCTAAGCAAGGGAACACTACCAAAGATGAAAGTTCAGAGCCTCAGCATAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCATCACTTAGTCAAAACTACATCTCTTCTGGAACAGGCATTTGGCATGGATCAAGATCAGCAGACCTGAAAAGCCCACACACACTACATACTGGCATTGACTTGACCCGTGGGTGA 1062 0.4793 MDGREAMAFSGGSASYYIHRGGVAGSGSGAQTVGGGFQAPPGFRALSNTGIPAQSNAKVQGGSVGSSSSFSVEPQGHTNFNHGISIGASFGAPSGETVKKKRGRPRKYGPGGPVSLRLSPMSAPVNSTLGSTTPSQKKGRGRPPGSGRKQQLSNLGEWMNSSAGLAFSPHVITIGVGEDIVANLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNASMTYEGRFQILCLSGSYLVAEDAGPSKRTGGISVSLSSPDGQVIGGGVAMLIAGSPVQVVVCSFVYGGPKTKPKQGNTTKDESSEPQHSDKLASPASAPSLSQNYISSGTGIWHGSRSADLKSPHTLHTGIDLTRG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00567 353 MobiDBLite consensus disorder prediction 120 139 - -
Rops2g00567 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 313 IPR039605 GO:0003680
Rops2g00567 353 Gene3D - 169 296 - -
Rops2g00567 353 MobiDBLite consensus disorder prediction 306 331 - -
Rops2g00567 353 CDD DUF296 169 281 IPR005175 -
Rops2g00567 353 MobiDBLite consensus disorder prediction 48 85 - -
Rops2g00567 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 282 IPR005175 -
Rops2g00567 353 MobiDBLite consensus disorder prediction 45 152 - -
Rops2g00567 353 MobiDBLite consensus disorder prediction 288 353 - -
Rops2g00567 353 ProSiteProfiles PPC domain profile profile. 161 303 IPR005175 -
Rops2g00567 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 166 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00567 Rops-Chr2 8271698 8275375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00567 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.614 1.06e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00567 - - gmx:100813888 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00567 2 8271698 8275375 Rops2g00567 2 8271698 8275375 ECH
Rops1g02189 1 43435596 43439657 Rops2g00567 2 8271698 8275375 PCT