LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00555	ATGAGAAACCATGTGACTACATCAATGGCAAATGGGTCCGCGACAGGAGAGGCCCTTTGTATAATGGTACAACCTGTGATACCATCAAACCAAACCATAATTGTATCATCAATGGCAGGCCTGACTCGGGCTATATTTATTGGAGATGCATACCAAAATGATTGTGTCCATTGGTGCTTGCCAGGGCCTATAGACACATGGAATAAGATTTTTCTTGAGCTTATGAAGAGGTGGAGGAGGAACAGTCATCGAGTAAAGAGTGAGGATTCCTTAAATGCAAAGCTTAATAGAACAGAAATTGAAAATTCCTGGTTCTTTTTTGGTGGCTCATATCTTGGAGCACTTGCAAGTGAGCCTGTTGTTGTTAAAAAGGGGCAACATATTGTTGAAGTCAAGCTGCAGGGTATTACTAAAGGGTTAGTTGCACAAGAAGTTCTGTCTACATTAACCAGGAATGGAAAATCACTAGATTTTGTACTATGCATTGGAGATGATAGATCTGATGAGGATATGTTTGGGAGCATATTAACCAAACCTTACAGTGCAACCTCCTCTTCAGCACTAGAAATTTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACCTAGATGAATTGTGGATGTGA	636	0.4041	MRNHVTTSMANGSATGEALCIMVQPVIPSNQTIIVSSMAGLTRAIFIGDAYQNDCVHWCLPGPIDTWNKIFLELMKRWRRNSHRVKSEDSLNAKLNRTEIENSWFFFGGSYLGALASEPVVVKKGQHIVEVKLQGITKGLVAQEVLSTLTRNGKSLDFVLCIGDDRSDEDMFGSILTKPYSATSSSALEIFACTVGQKPSKARYYLDELWM*	212

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00555	211	FunFam	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	110	210	-	-
	Rops2g00555	211	Gene3D	-	96	209	IPR023214	-
	Rops2g00555	211	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	115	208	IPR001830	GO:0003824\|GO:0005992
	Rops2g00555	211	Pfam	Trehalose-phosphatase	116	208	IPR003337	GO:0003824\|GO:0005992
	Rops2g00555	211	SUPERFAMILY	HAD-like	110	208	IPR036412	-
	Rops2g00555	211	Pfam	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p	50	73	IPR026057	GO:0016740

Showing 1 to 6 of 6 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00555	Rops-Chr2	8039096	8040062	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00555	114	208	Trehalose Biosynthesis Gene Families	AT4G17770	60.000	5.18e-33	123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00555	K16055		-	gmx:100812031	159.844

Showing 1 to 1 of 1 entries