Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00550 ATGGTGCCAGAAAACATGAAGAAACAACTTGCTTTGGCTGTGAGGAGCATCCAATGGAGCTATGCAATTTTCTGGTCTGATTCACCTAACCAACCGGGGGTCTTGAGCTGGGGGGAAGGATATTACAATGGAGATATTAAGACTAGGAAAACAAGTCAAGGAGTGGAACTTAATTCTGATCAAATAGGCTTGCAGAGGAGTGAGCAGTTGCGAGAGCTATTCTGGTCCCTTAAAACTGCAGAAACCAGCCCACAAACAAAAAAGCCTTCAACAGCACTGTCCCCTGAAGATCTCACAGATGCAGAATGGTTTTATTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCGAATGGGCAACCCATTTGGTTGAACAATGCCAACTCCACTGATTGCAAATTTTTTAGTCGCGCTCTGCTGGCAAAGAGTGCATCTATTCAGACAGTGGTGTGCTTTCCTTTTATGGACGGAGTTATTGAGCTTGGGACAACTGATCTGGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCATTCTTGAATAATCTGTATGTCAATGATCCTATCAAGTCCGGAGCTACATTAAAATCAAGAAACAAGGAAGGTGTTGCTAGTGTAGCATTTGATCATAATGCATATAATGTTGAATTAATTCCAGAAGTTGGGTATGGTGTAATCAACACAACAACCTCTCCTAATGGTAGTTCAAATGCGTTACAAGCCAATCAACCACCAGATGAAATATTCATGGTTGAAAGGATAAACCGTGGCACCTCTCAAGTTCAAAGCTGGCAAGTGATGGATGATGAATTGAGCAATGGTGTCCATAACTCCATGAATTCTAGTGACTGTATATCACAAACTTTTGCCAGCACTGAGAAGATTGCTTCTGCTCACAAGGGTGAAAACCTTTCTGACCCTTGTGCTAGAGACCTTCAAAAGTGCAATAACCCAAAAATGACTTTAGTGGATCCTAGAAGTGATGATTGGCATTATCAGACAGTTCTTTCTGCCCTTTTAAAAAGCTCGGACCAGTTAATCATGGGGATGCATTTTCAAAACTTTCATCAGGAATCAAGCTTTTCAAGTTGGAAGAAAGAAGTGCCAATTGATTGCCAAAGGCCAAGAGCAGGAACCTCACAAAACTTGTTGAAGAAGGTATTGTTTGAAGTTTCTCGGATGCACTTGGAAGGGCTGCTAGAGTCTCAAGAAGAGAATGACTACAAAGAGGGAACAAGACTAGAGGCTGATGAAATTGGCATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCTAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATACTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAGGATAAGCGAGTTGGAAGCTCACATGGAAACAACAGATATAGAAAATAGGACTAAAAAATCACCTCAAGATATGCTGGAGAGGACTTCTGATCATTATTTTAATAGAAGTAATAATGGCAAGAAACCAGGGGTTAAAAAGAGGAAAGTTTGTGACATAGAGGAGACAAGGCGAGAGATTAACTCAGATGCTTTAAAAGGGGCTTCTGCTTATGATGTTACTGTCATTATGAATGATAATGAAGTTGTGATCGAAATGAAGTGCCCTTCGAGAGCAGGAAGGCTGTCAGAAATCATGGAAGCAGTTAACAGTCTCGATATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATCTTTATCTGACCATTAAATCTAAGTTCACAGGACCAACTAATGCAACAGCAAAAAGGATCAAACAAACACTCCAAAAAGTGGCTTCAAAGTGTTGA 1893 0.4025 MVPENMKKQLALAVRSIQWSYAIFWSDSPNQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFWSLKTAETSPQTKKPSTALSPEDLTDAEWFYLVCMSFVFNIGQGLPGRALANGQPIWLNNANSTDCKFFSRALLAKSASIQTVVCFPFMDGVIELGTTDLVSEDLSLIQQIKTSFLNNLYVNDPIKSGATLKSRNKEGVASVAFDHNAYNVELIPEVGYGVINTTTSPNGSSNALQANQPPDEIFMVERINRGTSQVQSWQVMDDELSNGVHNSMNSSDCISQTFASTEKIASAHKGENLSDPCARDLQKCNNPKMTLVDPRSDDWHYQTVLSALLKSSDQLIMGMHFQNFHQESSFSSWKKEVPIDCQRPRAGTSQNLLKKVLFEVSRMHLEGLLESQEENDYKEGTRLEADEIGMNHVLSERRRRAKLNERFLTLRSMVPSNTKDDKVSILDDAIEYLRKLEKRISELEAHMETTDIENRTKKSPQDMLERTSDHYFNRSNNGKKPGVKKRKVCDIEETRREINSDALKGASAYDVTVIMNDNEVVIEMKCPSRAGRLSEIMEAVNSLDIDFNSVQSTEADGNLYLTIKSKFTGPTNATAKRIKQTLQKVASKC* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00550 630 Gene3D - 106 172 IPR029016 -
Rops2g00550 630 SMART finulus 434 483 IPR011598 GO:0046983
Rops2g00550 630 MobiDBLite consensus disorder prediction 495 528 - -
Rops2g00550 630 Gene3D - 427 491 IPR036638 GO:0046983
Rops2g00550 630 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Rops2g00550 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 428 477 IPR011598 GO:0046983
Rops2g00550 630 PANTHER TRANSCRIPTION FACTOR TT8 2 628 - -
Rops2g00550 630 MobiDBLite consensus disorder prediction 495 514 - -
Rops2g00550 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 493 IPR036638 GO:0046983
Rops2g00550 630 Pfam Helix-loop-helix DNA-binding domain 432 478 IPR011598 GO:0046983
Rops2g00550 630 Coils Coil 467 494 - -
Rops2g00550 630 Gene3D - 534 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00550 Rops-Chr2 7949300 7953230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00550 2 630 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.248 1.14e-176 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g00550 bHLH-MYC_N 4.3e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00550 - - gmx:100808167 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00550 2 7949300 7953230 Rops2g00550 2 7949300 7953230 ECH