Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00544 ATGGAGAAGGAGGAAGATGTTAAGGTTGGAGCAAACAAATTCTCAGAAAGGCAGCCATTGGGGACAGCAGCCCAGAGTGACAAGGACTACAAGGAGCCACCCCCAGCTCCTCTTTTTGAGCCTGGGGAACTCAAGTCATGGTCCTTTTATAGAGCTGGGATTGCTGAGTTCGTGGCAACCTTCTTGTTCCTCTACATCACCATATTGACTGTGATGGGTGTCCAGAGGTCACCCAAGTGTTCCTCAGTTGGCATTCAAGGAATTGCCTGGTCTTTTGGTGGTATGATCTTTGCCCTTGTGTACTGCACTGCTGGAATATCAGGTGGACACATCAACCCAGCTGTGACCTTTGGTCTATTTTTGGCTAGGAAACTCTCCCTCACAAGAGCACTATTTTACATTGTCATGCAGTGTCTTGGTGCTATTTGTGGTGCTGGTGTGGTGAAGGGTTTTGAGGGTAATGCTCGGTATGAGATGTTCAAAGGTGGAGCAAATTTTGTAAGTCCTGGATACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTTATTCTTGTCTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCATGTTCCTATTTTGGCTCCACTTCCCATTGGGTTTGCTGTGTTCTTGGTACACTTGGCCACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTCAACAGGGACTTAGCTTGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCTGTGGAGCTGCCCTTGCTGCTTTGTATCACCAAATAGTCATCCGAGCTATTCCTTTCAAGACAAGGGCTTGA 858 0.4779 MEKEEDVKVGANKFSERQPLGTAAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVQRSPKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGNARYEMFKGGANFVSPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDLAWDDHWIFWVGPFCGAALAALYHQIVIRAIPFKTRA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00544 285 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 FunFam Probable aquaporin PIP1-2 36 285 - -
Rops2g00544 285 CDD MIP 51 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 MobiDBLite consensus disorder prediction 1 33 - -
Rops2g00544 285 NCBIfam MIP family channel protein 55 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 ProSitePatterns MIP family signature. 110 118 IPR022357 -
Rops2g00544 285 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g00544 285 SUPERFAMILY Aquaporin-like 43 277 IPR023271 -
Rops2g00544 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 280 IPR034294 -
Rops2g00544 285 Gene3D Glycerol uptake facilitator protein. 36 283 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00544 Rops-Chr2 7912839 7914298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00544 3 285 Major Intrinsic Protein MIP AT3G61430 85.915 1.52e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00544 K09872 - gmx:100793242 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00544 2 7912839 7914298 Rops2g00544 2 7912839 7914298 ECH