Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00543 ATGGCATCATTCTCTCATGGTTCTCAACCCTCATTAATCGCTAAGAGAGATAGCATAAAGAAAACAAAACTTAAAGACCAACAGAGGCTGATCTTCGTTGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCAACTCTCCACCTTGTCCTCCGTCTCAGGGGAGGTATGCAGATTTTCGTGAAGACTCTTACCGGCAAGTCTATTACTCTTGAAGTCGAGAGCTCTGACACAATTGATAATGTTAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCATCAAATGTTGATTTTCACAGGGAAGCATCTTGAAGACAGCGGTGAGATGGTGAGAGAACACAAGTGA 375 0.4507 MASFSHGSQPSLIAKRDSIKKTKLKDQQRLIFVGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDHQMLIFTGKHLEDSGEMVREHK* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00543 124 Gene3D - 64 114 - -
Rops2g00543 124 ProSiteProfiles Ubiquitin domain profile. 64 124 IPR000626 GO:0005515
Rops2g00543 124 ProSiteProfiles Ubiquitin domain profile. 26 63 IPR000626 GO:0005515
Rops2g00543 124 SMART ubq_7 1 59 IPR000626 GO:0005515
Rops2g00543 124 SMART ubq_7 64 122 IPR000626 GO:0005515
Rops2g00543 124 Gene3D - 11 63 - -
Rops2g00543 124 Pfam Ubiquitin family 66 116 IPR000626 GO:0005515
Rops2g00543 124 Pfam Ubiquitin family 24 61 IPR000626 GO:0005515
Rops2g00543 124 ProSitePatterns Ubiquitin domain signature. 90 115 IPR019954 -
Rops2g00543 124 PANTHER UBIQUITIN 24 65 - -
Rops2g00543 124 FunFam Polyubiquitin-C 64 122 - -
Rops2g00543 124 PRINTS Ubiquitin signature 74 94 IPR019956 -
Rops2g00543 124 PRINTS Ubiquitin signature 95 115 IPR019956 -
Rops2g00543 124 SUPERFAMILY Ubiquitin-like 26 63 IPR029071 -
Rops2g00543 124 SUPERFAMILY Ubiquitin-like 63 116 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00543 Rops-Chr2 7910540 7911272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00543 26 64 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.872 3.00e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00543 - K08770 vvi:100261369 167.933