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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Rops2g00543
ATGGCATCATTCTCTCATGGTTCTCAACCCTCATTAATCGCTAAGAGAGATAGCATAAAGAAAACAAAACTTAAAGACCAACAGAGGCTGATCTTCGTTGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAACATCCAGAAGGAGTCAACTCTCCACCTTGTCCTCCGTCTCAGGGGAGGTATGCAGATTTTCGTGAAGACTCTTACCGGCAAGTCTATTACTCTTGAAGTCGAGAGCTCTGACACAATTGATAATGTTAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCATCAAATGTTGATTTTCACAGGGAAGCATCTTGAAGACAGCGGTGAGATGGTGAGAGAACACAAGTGA
375
0.4507
MASFSHGSQPSLIAKRDSIKKTKLKDQQRLIFVGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDHQMLIFTGKHLEDSGEMVREHK*
125
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Rops2g00543
124
Gene3D
-
64
114
-
-
Rops2g00543
124
ProSiteProfiles
Ubiquitin domain profile.
64
124
IPR000626
GO:0005515
Rops2g00543
124
ProSiteProfiles
Ubiquitin domain profile.
26
63
IPR000626
GO:0005515
Rops2g00543
124
SMART
ubq_7
1
59
IPR000626
GO:0005515
Rops2g00543
124
SMART
ubq_7
64
122
IPR000626
GO:0005515
Rops2g00543
124
Gene3D
-
11
63
-
-
Rops2g00543
124
Pfam
Ubiquitin family
66
116
IPR000626
GO:0005515
Rops2g00543
124
Pfam
Ubiquitin family
24
61
IPR000626
GO:0005515
Rops2g00543
124
ProSitePatterns
Ubiquitin domain signature.
90
115
IPR019954
-
Rops2g00543
124
PANTHER
UBIQUITIN
24
65
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Rops2g00543
Rops-Chr2
7910540
7911272
Transposed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Rops2g00543
26
64
Cytoplasmic Ribosomal Protein Gene Family
AT3G52590
94.872
3.00e-21
80.9
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Rops2g00543
-
K08770
vvi:100261369
167.933
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