Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00530 ATGATGGGCGGTTGTTGTTGCTGTTGTGCTTCCAAGGAAACTGTATTGAGCGCTCCACCTGCTCACCAGGAGCATGTTCCACTATCATCTCACCAGGGTGCTGCCTCTGCTTTCTCTAGGCGGCTCTTGGTTGACACTAATCTAGATACTTCAAGTCCTGATACTTATAGACCACCTCCTGCTCCTATCCCTTTCAATGTTACGTTAGGTGCCACTCAAACTCCACCTGTGGCTCAAGAAATTTGTGATGTCAAGAACAATACACCAGTTGCTGGAGAGAATCACGAGACCTCAGCTAAGTTGGAAGAGCTGACGGAATCAGAATGCAAAGTTCAGACTGATCTAGAAGTAGACTCGGCAAAGGATTCTGAATTTGAACTTTCAAAGTTGGGAAAACCTATAAATTTAGTAGAAGAGGAGGATGCATGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCAATACAAAATGTGACCATCATTATCACCTTGCATGCATTCTGGAATGGATGGAAAGACGTGAAACTTGCCCTGTGTGTGATCAGGATATGGTTTTCAACCCTCCTATTGAATAA 585 0.4359 MMGGCCCCCASKETVLSAPPAHQEHVPLSSHQGAASAFSRRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGATQTPPVAQEICDVKNNTPVAGENHETSAKLEELTESECKVQTDLEVDSAKDSEFELSKLGKPINLVEEEDACPICLEEYDAENPKLNTKCDHHYHLACILEWMERRETCPVCDQDMVFNPPIE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00530 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 189 IPR013083 -
Rops2g00530 194 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 31 190 - -
Rops2g00530 194 SUPERFAMILY RING/U-box 137 190 - -
Rops2g00530 194 SMART ring_2 143 183 IPR001841 -
Rops2g00530 194 Pfam Ring finger domain 142 183 IPR001841 -
Rops2g00530 194 FunFam Putative E3 ubiquitin-protein ligase RHB1A 120 188 - -
Rops2g00530 194 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00530 Rops-Chr2 7714996 7718713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00530 2 190 C3H Transcription Factor Family AT5G41350 45.972 1.82e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00530 - - gmx:100816369 338.576