Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00524 ATGGGATTCCCAGTGGGTTACACAGAACTTCTCTTCCCAAAGCTTCTTCTTAACATCCTCTCCCTCTTGAGTTTCATCAGAAATCTCATTTGCACCTTCTTCCACTACCTGGGTCTTCTCGAACCCGACATTGCCTGGCCCGACCCGAATATCCGGATACCCGAATTCGAATCGGTGTCGGCCCTCTTGATCCGGGAAATCCTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGACCCACCTGACAGCTGCGCCGTTTGTCTGAGTGAGTTCGACGAAAACGATGAGATCAGACGGTTGGCGAACTGTCGACACATCTTCCACCGAGGTTGTCTGGACCGTTGGATGGGGTATGATCAAAGAACATGTCCATTGTGCAGAACACCTTTTATACCTGATGATATGCAAGGTGCTTTCAATGAAAGACTCTGGGCTGCTTCTGGAATTCCTGAATTTCACTCTGAATATCCTCATGTTCCTGTTTTGTAA 486 0.4938 MGFPVGYTELLFPKLLLNILSLLSFIRNLICTFFHYLGLLEPDIAWPDPNIRIPEFESVSALLIREILPVVKFRELVDPPDSCAVCLSEFDENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQGAFNERLWAASGIPEFHSEYPHVPVL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00524 161 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Rops2g00524 161 Pfam Ring finger domain 81 126 IPR001841 -
Rops2g00524 161 SMART ring_2 83 125 IPR001841 -
Rops2g00524 161 SUPERFAMILY RING/U-box 63 132 - -
Rops2g00524 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 133 IPR013083 -
Rops2g00524 161 SMART ringv_2 82 126 IPR011016 GO:0008270
Rops2g00524 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00524 Rops-Chr2 7652326 7653012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00524 1 147 C3H Transcription Factor Family AT1G63840 56.774 1.91e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00524 K16281 - jre:109014495 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02199 1 43608044 43608526 Rops2g00524 2 7652326 7653012 PCT