Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00522 ATGGCTAGACAATCAACTGGATTCTTCTACTCAGATGTTTCATCTGGTAACCCAACGATTCAAAACCATATCCAAGGCTTTGTGTCAGACCCTGAGATGTTCAATCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCAACAGAGTGACAACAACACCGTGATGTGGAAAAGTTTCTTAGGCAAAACAGGTCAACACGCAGGTCCTTCTTCCTCAAATACCATGAATGGGTCTTCCAGCAATTTCTATCATCAGCTTGAGTATAATAAACAAGATTTCACATCAGGGATTTCTGAGACAAGTAGTGATAATCTAATCGTGGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAATAGATTGCTAGTTGATGATTCTTCTTTGAGGTCTGTGTTCCCTTATGAAGGTAATAACCAAAGACCAAGTCAAGGTCTTTCACTCTCTCTTAGTTCAACCAACCCTTCCACTATTGGGTTGCAATCTTTTGAGCTAAGACACACTGGCCATCATCAACAACAACAAATGTTGCAAGATGCAAATATTTATCAGGGACATTTCATGCTCAACAGCTCCGAGTTCTTAGTACCTGCACAGGAACTTCTGAACGAGTTTTGTAGTTTAGGGACAAAGCAAAATGATGTACCAAAGCAAAAGTCTCAAAAGAACAAGCAGTGCGAAGAGGATAACGGTGGTGGTTCCTCAAAGAAACATTCTTTTAGCTCTCTAGAATTCATGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGATACAGGCACTATTGTAATCAGATGAAGGGTGTTGTCTCCTCGTTTGAAGCAGTGGCTGGTAATGGTGCTGCCAGAGTGTACTCAGCTTTGGCTTTGAAAGCCATGTCTAGACATTTCAGATGCTTGAAGGATGGGATTTTGGATCAGATTCAAGCCACAAGAAAAGTCATGGGTGAGAAAGACCCGATTTCACCAGGCACATCAAGGGGTGAAACACCTAGGCTTAGATTCATTGACCAAACACTGAGACAACAAAGGGCATTCCAACAAATCAACATGATGGAAACCCATCCATGGAGACCCCAACGTGGCCTTCCTGAACGATCTGTCTCAGTTCTTCGGGCTTGGCTTTTCGAACACTTTCTCAATCCGTACCCAAACGATGTTGATAAACATATTTTAGCACGCGAAACTGGTCTTTCAAGAAGCCAGGTTTCAAATTGGTTTATTAACGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAAAAGGAGCATGAAAAGAACATGGCATCAAATCATGAAGAGGATATTAGCCAGAATGTTCAAAACCTATCTCCAACACGAAATGAAGATCAAAAGCCAACACAGGCTCGACTCCTTCGAATTGATTCTGAGTGTGTGTCGTCTATCATCAACAACCCAGATCCTAAAAACGACACAAAGAACAATCAAACCATCCAAAACGACCACCACCGCATGAATCCACAAGAACAATGTTTAGGGAGAGCCAATGACACATTTGGGTCTATTGATATTGATTTTTCATCTTATAGTAATCAAAACACCAATCAGGGTTTCCATGGTGGAGTGTCATTGACACTAGGGTTACAACAACATGGTGGAAACGGGGTTAACTTGGGGTTCCCACCACCAACACAAAGCTCAATGTTCTACACAAGGGACCAGATTGAAGAGTGTCAACCAGTTCATTACTCTCTTTTGGATGGTGAAGGACAAAATATGCAGTACAGGAATCTGATGGGAACACACTTGCTTCATGACTAG 1830 0.4257 MARQSTGFFYSDVSSGNPTIQNHIQGFVSDPEMFNLTTGMEMIGFSKNLQQQSDNNTVMWKSFLGKTGQHAGPSSSNTMNGSSSNFYHQLEYNKQDFTSGISETSSDNLIVGGAHDSAPWQENRLLVDDSSLRSVFPYEGNNQRPSQGLSLSLSSTNPSTIGLQSFELRHTGHHQQQQMLQDANIYQGHFMLNSSEFLVPAQELLNEFCSLGTKQNDVPKQKSQKNKQCEEDNGGGSSKKHSFSSLEFMELQKRKTKLLSMLEEVDRRYRHYCNQMKGVVSSFEAVAGNGAARVYSALALKAMSRHFRCLKDGILDQIQATRKVMGEKDPISPGTSRGETPRLRFIDQTLRQQRAFQQINMMETHPWRPQRGLPERSVSVLRAWLFEHFLNPYPNDVDKHILARETGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEHEKNMASNHEEDISQNVQNLSPTRNEDQKPTQARLLRIDSECVSSIINNPDPKNDTKNNQTIQNDHHRMNPQEQCLGRANDTFGSIDIDFSSYSNQNTNQGFHGGVSLTLGLQQHGGNGVNLGFPPPTQSSMFYTRDQIEECQPVHYSLLDGEGQNMQYRNLMGTHLLHD* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00522 609 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Rops2g00522 609 MobiDBLite consensus disorder prediction 215 243 - -
Rops2g00522 609 MobiDBLite consensus disorder prediction 485 509 - -
Rops2g00522 609 CDD homeodomain 367 428 IPR001356 GO:0003677
Rops2g00522 609 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Rops2g00522 609 Gene3D - 370 449 - -
Rops2g00522 609 SMART prehox3 186 316 IPR006563 -
Rops2g00522 609 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 452 - -
Rops2g00522 609 SMART HOX_1 367 431 IPR001356 GO:0003677
Rops2g00522 609 SUPERFAMILY Homeodomain-like 368 433 IPR009057 -
Rops2g00522 609 MobiDBLite consensus disorder prediction 220 237 - -
Rops2g00522 609 Pfam Associated with HOX 191 314 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00522 Rops-Chr2 7599740 7603536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00522 81 609 Homeobox Transcription Factor Family AT5G41410 45.591 8.86e-137 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops2g00522 POX 2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00522 - - gmx:100792789 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02201 1 43639437 43643440 Rops2g00522 2 7599740 7603536 PCT