Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00497 ATGGAACAGAAAAGCCTTTTGATATCGGCGTTGAGTGTTGGGGTTGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGACCAAGTGTTGGTAAATGGGGAGCTAACACTTTTTCATCAAACGCCATTACTGCTGAGAATATAGAGCATGAAATGCTAAGACAAGTTGTTGATGGCAGAGAAAGCAACATCACTTTTGATAAATTCCCTTATTACCTCAGTGAGCAGACGCGGGTTTTGCTGACAAGTGCTGCTTATGTTCATTTAAAGCATGCTGAAGTTTCTAAATATACACGTAATCTTGCTCCTGCAAGCAGGACTATTCTGCTGTCAGGGCCTGCAGAACTTTACCAGCAGATGCTTGCCAAAGCTTTGGCTCATTACTTTGAGGCCAAATTGCTTCTGTTAGATTTAACCGACTTTTCATTGAAGATTCAGGGTAGATATGGCTCTGGCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGCGGCTATCTGACCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAGGAACCTAAAGGCAAAATGCACAGGCAAAGCAGTGGAGTGGACCTACAATCAATGGGGCCTGAAGCATCTTGTAATCCTCCAAAGCTCCGTAGGAATGCTTCTTCCTCTTCAAATATTAGCGGCCTTGCTTTGCAAAACAATCCTACAAATTCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTTCTGGTTTTTGTGTCAAAAACCTATCCCATTGTGTTATATCTGCGGGATGTTGATAAGTTGTTATACAGATCACAAAGGATATATAACTTGTTCCAAAAAATGTTGAAGAAACTATCTGGACCAATTTTGATTCTTGGTTCACGAGTTCTAGATTCTGATAATGACTATGAAGAGCTGGATGAGAGACTTACTTCACTCTTCCCATACAACATAGAAATCAGGCCTCCGGAAGATGAATCTCATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGACTCCATCTGTGTGGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACCGAAATGGAAAACTCATTATCTCTTGCAATAGCTTGTCCCATGCATTGGGTATATTCCACAAGGGGAAATTCAGTGTAAGAGATACATCAAAATTGGAAGATCAAGCCTTAAAATCTGAGATGCAAAAGGGGGAAGAAACCGTTACGAAACCAGAAGTCAAGTCTGGAAATGCTGCTCCTGTAAAAAAGGCTGAAGCAGAAATATCAACTTCAGTGAGAAAGGTAGATGGTGAAAATTCAGTTCCAGCATCCAAAGCTGCGGAAGTTCCTCCTGATAATGAATTTGAGAAGCGAATAAGGCCTGAGGTTATTCCAGCTGATCAGATTGGTGTCACATTCTCTGATATTGGTGCCTTAGATGAGACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGGAGGCCAGACCTTTTCGCTGGAGGCCTTCTAAAGCCTTGTAGAGGAATACTGCTATTTGGGCCTCCTGGCACTGGGAAGACAATGCTGGCAAAGGCCATTGCAAAGGAGGCAGGAGCAAGTTTCATCAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTTACACTTGCAGCCAAGGTCTCACCAACTATTATATTTGTGGATGAAGTTGATAGCATGCTTGGGCAGCGAACAAGAGTTGGGGAGCATGAAGCCATGAGGAAAATAAAGAATGAATTTATGTCACATTGGGATGGACTTATGACAAAACCAGGGGAGCGCATACTTGTTCTTGCTGCAACCAATAGACCATTTGACCTGGATGAAGCTATTATTAGGCGATTTGAAAGGAGAATTATGGTAGGACTACCATCTGTGGAGAATAGGGAGAAGATTTTGAGGACCCTTTTGGCAAAGGAAAAGGTGGACAAGGAACTTGATTTGAAGGAACTCGCGACTATGACAGAAGGATATACCGGAAGTGATTTAAAGAACTTGTGCACAACAGCAGCTTATCGACCAGTTAGAGAGTTAATTCAGCAAGAAAGGCTTAAGAATCTGGAAAAAAAGCAGAAGGCTGCGAAAGGAGAGAATAGAGATGCTAAGGATGCAGAAGAGGAAGTTCAACAGGAAAGAGTCATTACCCTTAGGCCACTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCAGAGGGAGCTGGAATGAGTGAGCTGAAACAGTGGAACGATTTGTATGGAGAAGGTGGTTCAAGGAAGCAACAGCAATTGTCTTACTTCTTATGA 2514 0.4193 MEQKSLLISALSVGVGVGVGIGLASGPSVGKWGANTFSSNAITAENIEHEMLRQVVDGRESNITFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQGRYGSGNKESSFKRSTSESTLERLSDLFGSFSIFSQREEPKGKMHRQSSGVDLQSMGPEASCNPPKLRRNASSSSNISGLALQNNPTNSAPLKRTTSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLYRSQRIYNLFQKMLKKLSGPILILGSRVLDSDNDYEELDERLTSLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAISYHLMKNKDLEYRNGKLIISCNSLSHALGIFHKGKFSVRDTSKLEDQALKSEMQKGEETVTKPEVKSGNAAPVKKAEAEISTSVRKVDGENSVPASKAAEVPPDNEFEKRIRPEVIPADQIGVTFSDIGALDETKESLQELVMLPLRRPDLFAGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDKELDLKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKNLEKKQKAAKGENRDAKDAEEEVQQERVITLRPLNMQDFKEAKNQVAASFAAEGAGMSELKQWNDLYGEGGSRKQQQLSYFL* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00497 837 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Rops2g00497 837 MobiDBLite consensus disorder prediction 451 472 - -
Rops2g00497 837 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Rops2g00497 837 MobiDBLite consensus disorder prediction 211 233 - -
Rops2g00497 837 MobiDBLite consensus disorder prediction 759 779 - -
Rops2g00497 837 Gene3D - 521 780 IPR027417 -
Rops2g00497 837 Pfam AAA+ lid domain 716 758 IPR041569 -
Rops2g00497 837 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 836 - -
Rops2g00497 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 376 IPR027417 -
Rops2g00497 837 Coils Coil 754 781 - -
Rops2g00497 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 761 IPR027417 -
Rops2g00497 837 MobiDBLite consensus disorder prediction 183 233 - -
Rops2g00497 837 Gene3D - 47 356 IPR027417 -
Rops2g00497 837 SMART AAA_5 558 695 IPR003593 GO:0016887
Rops2g00497 837 Gene3D - 694 776 - -
Rops2g00497 837 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00497 Rops-Chr2 7208582 7213859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00497 522 754 Calmodulin-binding Proteins AT3G56690 38.983 1.41e-43 169