Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00481 ATGGCTGTGCCTTCTATTAAACACACTCAGCACCTCAACCATGTCAAACTAGCCATGAGACCAATGAAACATCACTATCCTAAGCTCATACGAATACGTGTTGCCGATGGTGATGCCACTGATTCCTCCAGTGATGATGAAGAAGAAGAAGAACAAGCTAATGAGTCTTTTAAATGTCGGAGAGTGAAGAACTTTATCAACGAGATTACTATTGACACGTGCTCCGCTGAGAATGAAGGCATTGTTTCTAAGAAGAGATGCAGGGTCAAGTCCGTCACCGGAGCTCCGGTGAGTCGGCGGCGGGTCGGAGTTTGCTTTGGGAAGAAATTCCGGGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGGGATTCTTCGCTCCGGAAACGGCGGTGGTTGGGAACGTTCAACACTGCTGAAGAAGCTGCTATTGTGTATGACAAAGCCGCCATTGAGATTCGTGGTGCTGAGGCTCTCACTAATTTCATTAAGCCACCGACAGAGAATGAAAACTATAACTCCGGTTATAATTCCGGTAAAGAATGTGGAAACAACAACTTGAGTTCTCCCATTTCGGTTCTTCAATGTTGTTTGTTATCCGAGGATGCTGAGTCTGTAACTGCAATAGAAAATGTTGCCGAACCCAACGTGTCGGACAATGGTCAAGTTTCAGAAGATTTGTTCAAATCCGAGTCAATTTTTCCGATTCCAAGTGATATGATATTTGACTTTCAAAGCACGTTACCAGATATATTTGACAACATCATTGATGTTCCAGAGAGCATTTTCTTCCCAGATGATTTCCCTGAAAGTTTTGTCACCTCTAATGAGAGTTTTGATTTCGGTTTCACAAGTTGGCATAAAGATTATGATGATTTCCAAGATATTGGAGATTTGTTTGTATCGGATCCCATTACCACTTTGATTACATAA 942 0.4342 MAVPSIKHTQHLNHVKLAMRPMKHHYPKLIRIRVADGDATDSSSDDEEEEEQANESFKCRRVKNFINEITIDTCSAENEGIVSKKRCRVKSVTGAPVSRRRVGVCFGKKFRGVRQRPWGKWAAEIRDSSLRKRRWLGTFNTAEEAAIVYDKAAIEIRGAEALTNFIKPPTENENYNSGYNSGKECGNNNLSSPISVLQCCLLSEDAESVTAIENVAEPNVSDNGQVSEDLFKSESIFPIPSDMIFDFQSTLPDIFDNIIDVPESIFFPDDFPESFVTSNESFDFGFTSWHKDYDDFQDIGDLFVSDPITTLIT* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00481 313 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Rops2g00481 313 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Rops2g00481 313 SMART rav1_2 109 174 IPR001471 GO:0003700|GO:0006355
Rops2g00481 313 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Rops2g00481 313 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Rops2g00481 313 CDD AP2 108 165 IPR001471 GO:0003700|GO:0006355
Rops2g00481 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 218 - -
Rops2g00481 313 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Rops2g00481 313 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Rops2g00481 313 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00481 Rops-Chr2 6883346 6884287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00481 1 308 AP2-EREBP Transcription Factor Family AT4G23750 39.306 2.99e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g00481 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00481 - - gmx:100813992 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02237 1 44304446 44305862 Rops2g00481 2 6883346 6884287 PCT