Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00475 ATGGCTGACACAGTTGCTGAAGTACCCACAAAGAGAACAAGGGGCAACAGAAAGGCCCTGAAGGAGAAAGCCCCATCAACAAATGAAGCCAACATTTTGGCTGGGAAGGTTTCTGAATCCTCTGCAACACCAATTTCGCCACCATCTGAGAAGAGCCTTTCTCAACCCAAGAAGGAAAGAGCTGCCTCAAAGAAACAACAGTCCAAGAACCAATCTTTTGAGCAAGAATTGCTTGAGATGCAGGAAAAGATGCAGCAATTGCGTCTCGAAAAGGAGAAGACTGAAGAGCTCTTGAAGGCCAAAGATGAGGTCTTGAAACAGAAGGAGGAAGAGCTCGAAAATCGCGGCAAGGAGCAAGAGAAGCTTCAGAATGAGCTGAAAAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCATGAACTTGCCTGTGCTGAAAGACAAGGAACAAGAAAAGAAGGAAAAGAAGAAGAACAAGGGCTCTAAGATAAAAAGGCCTTCTCCACCTTACATTTTATGGTGCAAAGACCAATGGAATGAGACAAAGAAAGAGAACCCAGAGGCAGAATTTAAGGACGTTTCAAACATGCTGGGGGCTAAATGGAAGACAGTGAGCGCAGAAGAGAAGAAACCTTATGAGGAGAAATACCAAGCTGAAAAGGAAGCTTATTTGCAGGTAATTGCAAAGGAAAAACGTGAGACTGAGGCAATGAAGCTCTTTGAAGAGAAGCAGAACCAGAAGATTGCCATGGAATTGCTTGAACAGTTTATCCAATTCAAACAAGAGACAGAGAAAGAGAAAGAGAAAGAGAGCAAGAAGAACAAGAAAGAGAAGGATCCTTTGAAACCAAAGCACCCTATGTCAGCTTATTTCTTGTTCACTAACGATAGACGTGCGGCTCTTCTTGCAGAGAACAAAGGTGTTTTGGAGGTTTCCAAGATCACAGCTGAAGAGTGGAAAAACATGACAGAAGAACAAAGGAGGCCCTATGAAGAGATTGCAAAGAAGAACAGGGAGAAATATATCCAAGAAATGGAGGCTTATAAACAGAAAAAAGAAGAGGAGGCTGCCAATCTCATGAAGGAAGAGGAGGAGAATATGAAACTTCAGAAACAGGAAGCCTTGCTTCTGCTGAAGAAGAAGGAGAAAACTGAAAATATGATCAAGAAAACAAAATTGAATCGTCAGAAGAAGAAGCAAAACAAGGAAGATAAGAATTCTGACCCAAACAAGCCTAAGAGACCCCCATCTGCATTCCTCTTATTCAGTAAAGAAGTAAGGAAGAGTTTACAGGAGGAAAATCCAGGAATCAGTACCTCTACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAATTGAGTGAGGAAGAAAGACAAATCTGGAATGGACGCGTACAGTCCCTTGCTGCAGCAAGCCAGGAGCAGAAAACCGAAGAATAA 1437 0.4245 MADTVAEVPTKRTRGNRKALKEKAPSTNEANILAGKVSESSATPISPPSEKSLSQPKKERAASKKQQSKNQSFEQELLEMQEKMQQLRLEKEKTEELLKAKDEVLKQKEEELENRGKEQEKLQNELKKLQKLKEFKPTMNLPVLKDKEQEKKEKKKNKGSKIKRPSPPYILWCKDQWNETKKENPEAEFKDVSNMLGAKWKTVSAEEKKPYEEKYQAEKEAYLQVIAKEKRETEAMKLFEEKQNQKIAMELLEQFIQFKQETEKEKEKESKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLAENKGVLEVSKITAEEWKNMTEEQRRPYEEIAKKNREKYIQEMEAYKQKKEEEAANLMKEEEENMKLQKQEALLLLKKKEKTENMIKKTKLNRQKKKQNKEDKNSDPNKPKRPPSAFLLFSKEVRKSLQEENPGISTSTLNALVSLKWKELSEEERQIWNGRVQSLAAASQEQKTEE* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00475 478 Gene3D High mobility group box domain 265 363 IPR036910 -
Rops2g00475 478 Gene3D High mobility group box domain 145 249 IPR036910 -
Rops2g00475 478 MobiDBLite consensus disorder prediction 262 283 - -
Rops2g00475 478 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 471 IPR044601 GO:0003677
Rops2g00475 478 MobiDBLite consensus disorder prediction 1 79 - -
Rops2g00475 478 SUPERFAMILY HMG-box 151 225 IPR036910 -
Rops2g00475 478 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 411 478 IPR009071 -
Rops2g00475 478 SUPERFAMILY HMG-box 273 353 IPR036910 -
Rops2g00475 478 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 282 348 IPR009071 -
Rops2g00475 478 SMART hmgende2 161 231 IPR009071 -
Rops2g00475 478 SMART hmgende2 410 478 IPR009071 -
Rops2g00475 478 SMART hmgende2 281 349 IPR009071 -
Rops2g00475 478 MobiDBLite consensus disorder prediction 379 410 - -
Rops2g00475 478 MobiDBLite consensus disorder prediction 131 155 - -
Rops2g00475 478 Pfam HMG (high mobility group) box 282 348 IPR009071 -
Rops2g00475 478 Pfam HMG (high mobility group) box 162 224 IPR009071 -
Rops2g00475 478 Pfam HMG (high mobility group) box 411 474 IPR009071 -
Rops2g00475 478 MobiDBLite consensus disorder prediction 10 24 - -
Rops2g00475 478 MobiDBLite consensus disorder prediction 379 424 - -
Rops2g00475 478 CDD HMG-box_AtHMGB6-like_rpt1 164 230 - -
Rops2g00475 478 MobiDBLite consensus disorder prediction 131 168 - -
Rops2g00475 478 MobiDBLite consensus disorder prediction 31 52 - -
Rops2g00475 478 Coils Coil 63 132 - -
Rops2g00475 478 SUPERFAMILY HMG-box 398 467 IPR036910 -
Rops2g00475 478 Coils Coil 212 232 - -
Rops2g00475 478 Gene3D High mobility group box domain 390 477 IPR036910 -
Rops2g00475 478 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 162 230 IPR009071 -
Rops2g00475 478 MobiDBLite consensus disorder prediction 262 285 - -
Rops2g00475 478 Coils Coil 330 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00475 Rops-Chr2 6770300 6772790 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops2g00475 HMG_box 2.9e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00475 K09273 - gmx:100783033 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00475 2 6770300 6772790 Rops2g00475 2 6770300 6772790 ECH