Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00454 ATGGCTACTCTGCCTTCTTTCTTTTTATTGTTAATCCTTTTCTTGGTGGTTCACACTAGAACAAGTGCTGAGTTTACCTGTGAAAGCAAATCCTGCGAAAGTGGTGGAATTTCTATCAGGTTCCCGTTTTCTTTGAGACAATCGAATCAAAGCCAACGTTGTGGTTACCCGGGTTTCGAGCTATCCTGTAGCAAAAGCAACAACACTAGCCTTGGACTCAGCCAACCGTTGCTGACTTTTCCAGAATCTGGAAACTTCGTTGCGAAACGTATCTCTATCAAGGACCAAATGGTTTGGATTAATGACCCTGAAGAGTGTCTCCCAAAACGTTTTATGGGTGACCATGGTTTGAATCTAAAAGGCTCCCCTTTCAGATTGGCCGATTATTATACTTTTGTGGATTTTTCCTTTCTCAATTGCCCTTCCAATTTAACATACTCTTCTTTAGTACAGCCCATAAGTTGTTTAAATTTAGGCTCTGACAACAACAATAACAGCAGTGGCAGCAACCTTAATGATTCGGTGGTTGTAGCTATGATGTCGAATCCTCCCTTTTCTACGTCATGGACCTCATCGTGCCAACTGATTACCACGGCTTCCATCCCGGTTGGTAACATGCCATCGTTGTTTTGGACTGATTACTATTCTAACATACCCTTGCTGTGGGACGACCCTGATTGCAAGAATTGTGAAGAACGTGGAGGAAGATGTGGCTTCCTTGGGGACCCTGCTTTTCTTGTTTGTCATGATCTTCCCGATCAAGATCAAGGTCTTTCAAGCAAAGTCAAGTACGGTATCATCATGGGCCTTGGAATACCTGGACTCCTAGGTATCTGTGGGCTTGTATGTTTCCTCTGCAGCAAAAAGGACTCTGTTGATCAACGGAGACAAACAAGCACTGAATTTTCTACCCTAATCATACGGCACACTCCTGTTGTAGTCATGGGCCTTGATGGGGCAACCATAGAAAAATTTCCTAAAACCCAGCTTGGTGAAAGTGGAAGATTGCCCAAGCCCAGTGACAATGTTTGCTCTATATGTCTTTGTGAATACCAGCCCAAGGAGGTGTTAAGGACCATCCCAGAGTGTAATCACTATTTTCATGCGAATTGCATCGATGGTTGGCTCAAGATGAATGCTACGTGCCCGTTGTGTCGAAATTTACCCGAGAGATCCACTTCATTTCCCTCACCTTTGCCTTTGTCTCCTTCAATTCAATAG 1221 0.4382 MATLPSFFLLLILFLVVHTRTSAEFTCESKSCESGGISIRFPFSLRQSNQSQRCGYPGFELSCSKSNNTSLGLSQPLLTFPESGNFVAKRISIKDQMVWINDPEECLPKRFMGDHGLNLKGSPFRLADYYTFVDFSFLNCPSNLTYSSLVQPISCLNLGSDNNNNSSGSNLNDSVVVAMMSNPPFSTSWTSSCQLITTASIPVGNMPSLFWTDYYSNIPLLWDDPDCKNCEERGGRCGFLGDPAFLVCHDLPDQDQGLSSKVKYGIIMGLGIPGLLGICGLVCFLCSKKDSVDQRRQTSTEFSTLIIRHTPVVVMGLDGATIEKFPKTQLGESGRLPKPSDNVCSICLCEYQPKEVLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSTSFPSPLPLSPSIQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00454 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 390 IPR013083 -
Rops2g00454 406 CDD RING-H2_EL5-like 344 386 - -
Rops2g00454 406 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 389 IPR046948 -
Rops2g00454 406 Pfam Ring finger domain 343 386 IPR001841 -
Rops2g00454 406 SUPERFAMILY RING/U-box 339 389 - -
Rops2g00454 406 Pfam Wall-associated receptor kinase galacturonan-binding 27 102 IPR025287 GO:0030247
Rops2g00454 406 SMART ring_2 344 385 IPR001841 -
Rops2g00454 406 ProSiteProfiles Zinc finger RING-type profile. 344 386 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00454 Rops-Chr2 6489620 6492466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00454 27 389 C3H Transcription Factor Family AT2G46495 33.598 2.24e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00454 - - mtr:25502189 504.982