Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00453 ATGGCTTCCTTAGCCTTAATCTTTGTATTTTATGTCTTTCTTTTCCATCTCCAAAGTTCAATTTTAGGAGAACAAATTTGCAATACCTTACCATGTGGTGATATTGATATTCAATTTCCTTTCGGTTTGAAAGGAGCTAATCAAGATCTTGGTTGTAGCTATTTTCCCGGTCCCAGCTTCCAACTTTCTTGCAACAACCTTAGCCAAACAATTCTAAGCCTCCCATATTCTAAGGACTTGGTGGTGAAAAGCATCAATTATGAGACCCAAAGCATCAAAGTAAACGACCCAAATGGATGTCTCCCAAACCGGTTCTTAAATGACTGGAACCTCTCAGGTTCACCTTTCAAGTTAAACCCTTTAATTTACCAAACCTATAACTTTACCTTCCTTCGTTGTCCTTCCAACATGACCAAATCATCTCAATTTCCATTAAAACCAATTTCTTGCATGAGTGACCAAGGAAACTCAAACCCAAACTCCTCCTCTGTGATAGTTTCATGGTCACCACCTATTGACTCATCAACGTTGTCTCAACCGTGTGAGGTGATTTCCTCAGCTCTTGTTCCACTTGAATTGATGGAGATGCCCATGTGGCCCTTTTGGCCTGATCTTAATAGTGATGTTGGATTGGTGTGGACTGAACCCAGATGTGGTAACTGTGTTCTTAGTGGTCAAGTTTGTGGCTTCTCTAAGGATAAGAGCCTTCAAGTTGGATGCTTCCCTCGTTCCTCTGCTAAAGGTCTTTCAAGAAGTGTCAAATATGGCATTGCTATAGGAGTGGGAATACCTGGACTCTTATGTCTAATTGGATTTTCTTGCTTTATGTGCGGTAAGGTCACACAACGTAGACGGAGCATGGAATTTCCAACCACGATTTCCTTAGAACCCATCCCTTTTGTAATGGGGCTTGATGGTGCCACAATTGAAAAGTATCCCAAGACTCTTATTGGGGAAAGTGGACGCTTATTGAAACCCAATGATAATACCTGTGCCATATGTCTCTCTGAATATGAACCTAAAGAGACATTGAGGAGCATACCTGAGTGCAACCATTATTTTCATGCAGACTGTATAGATGAGTGGCTCAAGATGAATGGGACATGCCCAGTATGCAGGAATTCACCAGAGGCGTCTTCTACACTCACTCCTCCTTTTTCACCCACTTCTTCATTGTCCCTTTCACAATAG 1191 0.4165 MASLALIFVFYVFLFHLQSSILGEQICNTLPCGDIDIQFPFGLKGANQDLGCSYFPGPSFQLSCNNLSQTILSLPYSKDLVVKSINYETQSIKVNDPNGCLPNRFLNDWNLSGSPFKLNPLIYQTYNFTFLRCPSNMTKSSQFPLKPISCMSDQGNSNPNSSSVIVSWSPPIDSSTLSQPCEVISSALVPLELMEMPMWPFWPDLNSDVGLVWTEPRCGNCVLSGQVCGFSKDKSLQVGCFPRSSAKGLSRSVKYGIAIGVGIPGLLCLIGFSCFMCGKVTQRRRSMEFPTTISLEPIPFVMGLDGATIEKYPKTLIGESGRLLKPNDNTCAICLSEYEPKETLRSIPECNHYFHADCIDEWLKMNGTCPVCRNSPEASSTLTPPFSPTSSLSLSQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00453 396 Pfam Ring finger domain 329 373 IPR001841 -
Rops2g00453 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 376 IPR046948 -
Rops2g00453 396 Pfam Wall-associated receptor kinase galacturonan-binding 27 96 IPR025287 GO:0030247
Rops2g00453 396 SUPERFAMILY RING/U-box 323 376 - -
Rops2g00453 396 MobiDBLite consensus disorder prediction 376 396 - -
Rops2g00453 396 SMART ring_2 331 372 IPR001841 -
Rops2g00453 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 378 IPR013083 -
Rops2g00453 396 CDD RING-H2_EL5-like 331 373 - -
Rops2g00453 396 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00453 Rops-Chr2 6479190 6482016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00453 25 376 C3H Transcription Factor Family AT2G46495 35.097 6.22e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00453 - - gmx:100810240 548.895